Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/7c008aba8c64678838156f6e378d2a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/7c008aba8c64678838156f6e378d2a/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-u3d95q4s because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:59:03,652 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:59:04,438 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:59:04,605 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:59:05,601 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:59:05,811 - cnv_pipe.batch.run_model - INFO - Processing cluster 958 with 176 probes
2026-05-27 04:59:06,185 - cnv_pipe.batch.run_model.cluster958 - INFO - Child process started for cluster 958 with 176 probes
2026-05-27 04:59:58,749 - cnv_pipe.batch.run_model.cluster958 - INFO - Child process finished cluster 958. Wrote cluster_958_samples.csv and cluster_958_params.csv
2026-05-27 04:59:58,750 - cnv_pipe.batch.run_model - INFO - Cluster 958 finished in 52.94 seconds. Status: SUCCESS