File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/bde3e924cccb5ab4c4673717d85d47/.command.err
Size
1.3 KB
Attempt
mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-o7dioslr because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:59:14,581 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:59:15,375 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:59:15,546 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:59:16,557 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:59:16,633 - cnv_pipe.batch.run_model - INFO - Processing cluster 863 with 188 probes
2026-05-27 04:59:17,127 - cnv_pipe.batch.run_model.cluster863 - INFO - Child process started for cluster 863 with 188 probes
2026-05-27 05:00:12,935 - cnv_pipe.batch.run_model.cluster863 - INFO - Child process finished cluster 863. Wrote cluster_863_samples.csv and cluster_863_params.csv
2026-05-27 05:00:12,937 - cnv_pipe.batch.run_model - INFO - Cluster 863 finished in 56.30 seconds. Status: SUCCESS