File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/9738d5871730b844b21f1c72deb549/.command.log
Size
8.4 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/74abb830135c273be5391131e71d30/HCC1395_BL_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/f38524c4ec3cfad18c216cc4d584a2/Sig_18_Blood_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c9/581a4cc0548fa0be990524e59de15d/Sig_18_Blood.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/ead4006ca65450df1778eadb1204b3/HCC1395_tumor.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/aa0f1a7350b07d78730da6d0e83e33/HCC1395_BL.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/36/61454a6f540ed9323083379b99b1f3/HCC1395_BL_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/50/a20ad82bfe1ccb7fa591da3432a252/HCC1395_BL_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/2c9656fb6cbc776f64dc794d425523/Sig_18_Blood.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/8ee9986115c13ca5df5c762e98bd54/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/84e6c9edcaa308974ea68c362ea29f/HCC1395_BL_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/169380adc49a0e42a6ed335bfad313/Sig_18_tissue_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/06e8486c08143dfed1c8ee06194b14/HCC1395_tumor_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/8f80674762ceca719fc667ef56c574/HCC1395_tumor.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/8a3d0b9e692271e9909a694113a829/Sig_18_tissue_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/7a8bed8e8379ae0b0cf75ea97a9762/Sig_18_tissue.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/49aff502420125d5e9dfa05751ed38/Sig_18_tissue.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/42a190d1590cccc3937ee6796a6792/Sig_18_tissue_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/30/4cfca8da8a593e29f7a065d40d10d5/Sig_18_tissue_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/47a6fec8319e9df4a8f805f0501211/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/87592cee12f33fe3c97dd88c86e049/HCC1395_tumor.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/216bbc487931e5e3f636a5e2d4dcb4/Sig_18_Blood_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/872945ce7be00170c6e00e5347cc43/Sig_18_Blood.mosdepth.summary.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/9598468f86c97fdb67c2086b1d8859/HCC1395_tumor_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/9738d5871730b844b21f1c72deb549/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/03/4c8250fd7a5e264fc2df911fab0264/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/14b863da17eaf21e0f175d64891e1e/HCC1395_BL_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/aa7444de3ed92c20ae8a30e27ea34f/Sig_18_tissue_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/15e92063677092411513ecb76b0904/Sig_18_Blood_foresight_clarity_targets_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b4/4e1a683381c38cfdef97a546487414/Sig_18_tissue_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/9738d5871730b844b21f1c72deb549/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/07/c352393aabbbe5d80a4331dc631688/Sig_18_Blood_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/4657aca15fd2019eb6250191da2e2a/HCC1395_tumor_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d7/33aef109d742c120068931b8aa19e9/HCC1395_BL.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/0e6570ea68f8b87aefbcfd3e369ec3/HCC1395_BL.sentieon.insert_size_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/63/bb55cc54984344ab96bb5cf94c06ee/Sig_18_tissue.stats
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/37/f04bf2b7d758824df1fb26b55ff000/HCC1395_tumor_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/a4f4bfc2d05888badd87ec8219f794/Sig_18_Blood_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/bd719fa2a8d70b024c57c8f871c331/Sig_18_Blood_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/8f58320fcaeea1cff6643cc29b448a/HCC1395_tumor_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/633548210a457b841a2cbe6f890711/Sig_18_Blood_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/6f22c6773c035fb409ffaa5d4a3896/Sig_18_tissue/Sig_18_tissue_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/492edb31f7e5ac081bce32c294ad8a/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/b77d0bbc4ecca33727eaa62d2e618e/HCC1395_tumor_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/345f5262b638ee8f15ca872259f943/HCC1395_BL/HCC1395_BL_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/2fe4d876e4a5999f84cad108f39420/HCC1395_BL_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/dd0ebba21aa6179cdb1a65b36d8e54/HCC1395_tumor_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/179a8b629b6eaecea05c9bc2f185c7/HCC1395_BL_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/8691a08b234eebf3d6ee6c77bc5b5e/HCC1395_tumor/HCC1395_tumor_full_basic_stats.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/1705cb2d8e568bd80ca540d04c21f2/Sig_18_tissue_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/14/b4fffb8234a88a125f0abcf1e8429d/Sig_18_Blood/Sig_18_Blood_full_basic_stats.tsv
==> STAGING COMPLETE (50 inputs)

Post-dedup QC aggregation complete: 4 samples
Tools: samtools, mosdepth, sentieon, seqtool
Output: postdedup_qc.json