File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/43a9cf0215c7876d34908b0924864a/.command.log
Size
55.4 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr16_25246607-25247490.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/43a9cf0215c7876d34908b0924864a/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/3c4be24150a8745172b27c7cc104ed/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/3c4be24150a8745172b27c7cc104ed/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/43a9cf0215c7876d34908b0924864a/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T04:54:29.553348Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:29.553984Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:29.553995Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:29.554000Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:29.554004Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXkh7LI8'
[2026-05-27T04:54:29.554008Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:29.554012Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:29.554016Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:29.554020Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:29.554023Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:29.554027Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:29.554030Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:29.554034Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:29.554038Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:29.554644Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:29.554737Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:29.560452Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:29.561105Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:29.561265Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:29.561450Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:29.561719Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.562776Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.563115Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.563232Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.563450Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.564083Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.564346Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.565765Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.566065Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.566335Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:29.566586Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.566664Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.566779Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.566842Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.566956Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.567020Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.567133Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.567198Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.567332Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.567399Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.567612Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.567783Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568078Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568147Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568260Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568326Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568441Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568505Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568615Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568681Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568795Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568871Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568986Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.569050Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.569299Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.569634Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.569757Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.569821Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.569929Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.569992Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.570104Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.570168Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.570302Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.570441Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.570553Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.570618Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.570853Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.571223Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.571410Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.571480Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.571586Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.571651Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.571763Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.571824Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.571938Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.572014Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.587324Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.587769Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.587845Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.588001Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.588077Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.588164Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.588234Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.588341Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.588411Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:29.588461Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:29.592539Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.593073Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.593297Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.593662Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.594403Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.595363Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.596313Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.598572Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.600630Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:29.601246Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.604150Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T04:54:29.607180Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T04:54:29.611861Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T04:54:29.614072Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:29.615511Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T04:54:29.617421Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T04:54:29.618472Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T04:54:29.666649Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.667676Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.673041Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:29.700864Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.701601Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.705940Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:29.767198Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.768033Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.771088Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T04:54:30.584574Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.585373Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.588451Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T04:54:30.750225Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.751014Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.753984Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T04:54:30.767050Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.767814Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.770313Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T04:54:30.799865Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.800681Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.803310Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T04:54:30.965351Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.966133Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.968655Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T04:54:30.998616Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.999315Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.002062Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T04:54:31.214752Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.215535Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.218068Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T04:54:31.279911Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.280798Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.283725Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:31.696341Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.697102Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.699680Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T04:54:31.729438Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.730147Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.732951Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T04:54:31.894889Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.895656Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.898487Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T04:54:32.310909Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.311539Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.314349Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:32.343844Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.344493Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.347218Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:32.408604Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.409333Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.412061Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T04:54:32.523831Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.524484Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.527074Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T04:54:32.588624Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.588716Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.589342Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.589695Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.592548Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:32.593358Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T04:54:32.653960Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.654044Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.654081Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.654666Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.655065Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.655227Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.658244Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T04:54:32.659664Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:32.660566Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T04:54:32.688084Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.688941Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.689178Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.689980Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.692700Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T04:54:32.693581Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T04:54:32.854533Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.854641Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.855223Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.855592Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.858312Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:32.859201Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T04:54:32.887799Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.888679Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.888922Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.891089Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.891814Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T04:54:32.893888Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T04:54:32.955580Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.955666Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.956217Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.956533Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.959448Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T04:54:33.005061Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T04:54:33.021460Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.021564Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.022075Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.022382Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.025652Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T04:54:33.026446Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T04:54:33.086572Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.086689Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.087199Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.087570Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.090717Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T04:54:33.091597Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T04:54:33.151916Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.151993Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.152437Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.152718Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.155657Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T04:54:33.156392Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T04:54:33.185675Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.185745Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.186211Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.186796Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.189658Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T04:54:33.190693Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T04:54:33.251436Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.251984Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.254625Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T04:54:33.316174Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.731042Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.731525Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.734211Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T04:54:33.763582Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.228955Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.229045Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.229500Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.229779Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.233010Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T04:54:34.233440Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T04:54:34.294111Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.294216Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.294243Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.294675Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.297231Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T04:54:34.358651Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.923940Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.924420Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.926938Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T04:54:34.940412Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.940850Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.943301Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T04:54:34.956799Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.972677Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.337392Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.337837Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.340506Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T04:54:35.401941Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.402229Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.402397Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.402919Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.403343Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.407063Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:35.408237Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:35.409304Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:35.435922Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.436005Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.436029Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.436257Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.436815Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.439614Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:35.440211Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:35.469396Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.469464Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.469676Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.472107Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:35.501451Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.126019Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:48.442342Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:48.442342Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] 
[2026-05-27T04:54:48.442342Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:48.442389Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] 
[2026-05-27T04:54:48.442396Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:48.442402Z] [nf-d143a9cf0215c7876d34908b0924864a-c2ef2-dqgqh] [595_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec