File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/623dc4d261847e59c0989116bce3de/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-05-27T04:54:31.295576Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:31.296794Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:31.296805Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:31.296810Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:31.296814Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXdVQQVt'
[2026-05-27T04:54:31.296818Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:31.296823Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:31.296827Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:31.296830Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:31.296834Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:31.296838Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:31.296841Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:31.296846Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:31.296850Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:31.297446Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:31.297552Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:31.303471Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:31.304057Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:31.304290Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:31.304504Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:31.304767Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305461Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305555Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305631Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305753Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305822Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306152Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306420Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306594Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306836Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307128Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307802Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309330Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309745Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:31.309890Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310220Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310533Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310702Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310820Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310885Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311080Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311150Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311260Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311327Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311437Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311498Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312195Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312418Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312526Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312588Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312716Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312785Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312909Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312969Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313078Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313141Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313274Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313335Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313506Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313665Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313971Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314518Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314762Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315158Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315940Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316062Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316203Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316358Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316483Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316564Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317136Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317402Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317520Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317583Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317697Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317762Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317873Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317943Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318050Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318112Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318222Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318284Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318393Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318563Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.335782Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.336082Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.336272Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.337052Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.337243Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.337536Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.337819Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.338161Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.338571Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.338790Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.339252Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.341008Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.341422Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342144Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342189Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342947Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343400Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:31.344064Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.345198Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.349538Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T04:54:31.354638Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T04:54:31.357183Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T04:54:31.360662Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T04:54:31.363181Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T04:54:31.366518Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T04:54:31.367197Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T04:54:31.369663Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T04:54:31.477927Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.478017Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.478979Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.479226Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.483219Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T04:54:31.484775Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T04:54:31.544837Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.546035Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.549391Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T04:54:31.562349Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.563372Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.566600Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T04:54:31.678084Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.679606Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.682950Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T04:54:31.744195Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.745208Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.748248Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T04:54:31.859708Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.860823Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.864541Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T04:54:32.126303Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.127244Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.130911Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T04:54:32.242022Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.242122Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.242985Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.243396Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.247469Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T04:54:32.248800Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T04:54:32.308140Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.308972Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.312531Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T04:54:32.373977Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.374806Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.377813Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T04:54:32.439350Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.440462Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.444383Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T04:54:32.856746Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.857753Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.861467Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T04:54:33.323550Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.324409Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.327890Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T04:54:33.740613Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.741760Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.745327Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T04:54:33.774164Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.775037Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.778491Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T04:54:33.779050Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.779790Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.782686Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T04:54:33.843930Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.844889Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.848305Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T04:54:33.877383Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.878256Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.880550Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.881570Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.881770Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T04:54:33.884674Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T04:54:33.889606Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.890320Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.893529Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T04:54:33.922464Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.923246Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.925638Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.926534Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.926828Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T04:54:33.929886Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T04:54:33.942509Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.943139Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.946033Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T04:54:34.358390Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.359187Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.362333Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T04:54:34.423654Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.424421Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.428032Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T04:54:34.488902Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.489781Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.492875Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T04:54:34.505887Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.506607Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.509782Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T04:54:34.571120Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.571226Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.571973Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.572289Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.575914Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T04:54:34.577202Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T04:54:34.637565Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.638323Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.641388Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T04:54:34.702530Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.703399Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.706791Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T04:54:34.767994Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.768735Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.772539Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T04:54:34.833359Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.834067Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.837003Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T04:54:34.948960Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.950001Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.953219Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T04:54:35.014274Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.014399Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.015056Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.015415Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.018589Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T04:54:35.019741Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T04:54:35.031426Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.032057Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.034708Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T04:54:35.064119Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.064814Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.067911Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T04:54:35.072837Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.073443Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.076320Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T04:54:35.089248Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.089774Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.092326Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T04:54:35.121745Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.121851Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.122458Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.122773Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.125973Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T04:54:35.127134Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T04:54:35.138882Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.139549Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.142841Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T04:54:35.171724Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.172365Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.175640Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T04:54:35.204787Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.205571Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.208674Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T04:54:35.209507Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.210075Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.213622Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T04:54:35.242275Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.242904Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.246139Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T04:54:35.247209Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.279330Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.494048Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.494143Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.494618Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.494909Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.498074Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T04:54:35.499093Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T04:54:35.559454Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.559550Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.025217Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.025357Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.025962Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.026368Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.029607Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T04:54:36.030744Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T04:54:36.090781Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.090891Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.123186Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.124003Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.127249Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T04:54:36.188137Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.252454Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.253354Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.256939Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T04:54:36.318111Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.318553Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.318855Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.319363Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.319662Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.323245Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:36.324444Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:36.361264Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:36.384885Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.385004Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.385036Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.385474Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.385937Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.389033Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:36.417335Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:36.418454Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.418557Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.418928Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.421781Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:36.483459Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.998829Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:41.832951Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:41.832951Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] 
[2026-05-27T04:54:41.832951Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:41.833005Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] 
[2026-05-27T04:54:41.833012Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:41.833018Z] [nf-f3623dc4d261847e59c0989116bce3de-09508-2bgfv] [622_1] [WorkflowRunner] Elapsed time for full workflow: 10 sec