Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/0656e3d719f703fa6d2c9f8b1164ee/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/d5818a83b9029a4eaca1107ae554f8/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr19_15162349-15162662.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/d5818a83b9029a4eaca1107ae554f8/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/0656e3d719f703fa6d2c9f8b1164ee/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX27rsQD/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX27rsQD/chr19_15162349-15162662.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXX27rsQD/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T04:54:28.456061Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:28.456664Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:28.456676Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:28.456690Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:28.456697Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX27rsQD'
[2026-05-27T04:54:28.456701Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:28.456706Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:28.456710Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:28.456714Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:28.456718Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:28.456722Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:28.456725Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:28.456729Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:28.456733Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:28.457133Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:28.457233Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:28.463144Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:28.463766Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:28.463920Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:28.464213Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:28.464475Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.464927Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.465028Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.465100Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.465218Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.465285Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.465436Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.465504Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.465997Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.466157Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.466264Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.467099Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.467222Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.467455Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.468817Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.469342Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:28.469663Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.469891Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470016Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470078Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470259Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470328Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470445Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470513Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470625Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470690Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470807Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.470872Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.471121Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.471380Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.471491Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.471558Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.471689Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.471757Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.471866Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.471929Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.472039Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.472102Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.472216Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.472282Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.472390Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.472746Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.473148Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.473220Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.473844Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.473910Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.474022Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.474086Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.474427Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.474827Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.474944Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.475009Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.475123Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.475186Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.475297Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.475404Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.475530Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.475605Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.475717Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.475781Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.476065Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.476480Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.476592Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.476657Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.476781Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.476865Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.492956Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.493061Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.493132Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.493470Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.493664Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.493760Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.493825Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.493937Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.494026Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.495549Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:28.495753Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.496819Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.497295Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.497879Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.498799Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.499395Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.500145Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.500867Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.502517Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.506877Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:28.509408Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T04:54:28.512514Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T04:54:28.516949Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T04:54:28.520086Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T04:54:28.520352Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T04:54:28.523897Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T04:54:28.524862Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T04:54:28.620505Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.621502Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.624528Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T04:54:28.685772Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.686602Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.690071Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:28.801290Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.802240Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.805124Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T04:54:29.919801Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.920706Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.923848Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T04:54:30.035361Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.036361Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.040109Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T04:54:30.252047Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.252928Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.255777Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T04:54:30.285155Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.286061Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.288911Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T04:54:30.450814Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.450914Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.451734Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.452426Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.455864Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T04:54:30.456891Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T04:54:30.486725Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.487563Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.490632Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T04:54:30.520101Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.520213Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.520998Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.521319Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.524320Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T04:54:30.525596Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T04:54:30.586132Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.586956Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.590247Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T04:54:31.052678Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.052815Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.053577Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.053900Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.057047Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T04:54:31.058125Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:31.086067Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.086905Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.090180Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T04:54:31.151358Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.152179Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.155184Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:31.266658Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.267387Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.270428Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T04:54:31.331922Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.332773Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.335804Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T04:54:31.365136Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.366057Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.369287Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T04:54:31.480887Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.481729Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.484671Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T04:54:31.797127Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.797973Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.801328Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T04:54:32.063554Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.064399Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.067719Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:32.072229Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.072890Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.075715Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T04:54:32.105263Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.106344Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.106998Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.109541Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.111375Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:32.112042Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T04:54:32.173893Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.174664Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.178308Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:32.289317Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.290080Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.293317Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T04:54:32.354336Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.355057Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.358076Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T04:54:32.419629Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.419736Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.420400Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.420700Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.423701Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T04:54:32.424845Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T04:54:32.485347Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.485502Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.486135Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.488162Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.489323Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T04:54:32.491355Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T04:54:32.553211Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.553342Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.553979Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.554531Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.558115Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T04:54:32.559119Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T04:54:32.770288Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.771001Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.773723Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T04:54:32.803066Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.803725Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.806588Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T04:54:32.868154Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.868883Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.871976Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T04:54:32.901220Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.901875Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.904608Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T04:54:32.966236Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.966920Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.969706Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T04:54:33.031375Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.032042Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.034952Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T04:54:33.096387Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.097062Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.100804Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T04:54:33.161901Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.162549Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.165918Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T04:54:33.327405Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.328048Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.330999Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:33.392442Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.392566Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.393162Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.393453Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.396555Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:33.397232Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:33.458034Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.458139Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.458684Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.459031Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.462267Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:33.494722Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:33.524150Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.524266Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.524779Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.525126Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.528175Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T04:54:33.529113Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T04:54:33.557249Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.822256Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.822803Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.825932Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T04:54:33.887372Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.152305Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.152396Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.152832Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.153189Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.156162Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T04:54:34.157385Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T04:54:34.217889Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.217960Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.382557Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.383059Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.386351Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T04:54:34.447512Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.479737Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.480249Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.483153Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T04:54:34.512566Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.777297Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.777726Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.780489Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T04:54:34.809765Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.776253Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.776697Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.779136Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:35.808650Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.808914Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.809041Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.809300Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.809771Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.813475Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:35.814606Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:35.815946Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:35.841996Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.842066Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.842087Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.842283Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.842568Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.844861Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:35.845796Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:35.875107Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.875184Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.875356Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.877935Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:35.907677Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.079241Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:47.344800Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:47.344800Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] 
[2026-05-27T04:54:47.344800Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:47.344850Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] 
[2026-05-27T04:54:47.344857Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:47.344864Z] [nf-290656e3d719f703fa6d2c9f8b1164ee-07272-dj88d] [599_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec