Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/f9366e75d4447864b0d49d6c14d5f7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/435cb42eeb7ab15733f727b318c8de/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/f9366e75d4447864b0d49d6c14d5f7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3c/435cb42eeb7ab15733f727b318c8de/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXvc1HzH/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXvc1HzH/chr4_22420786-22421189.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXvc1HzH/chr4_22420786-22421189.bed.gz.tbi
[2026-05-27T04:54:22.794012Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:22.817563Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:22.817595Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:22.817600Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:22.817605Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXvc1HzH'
[2026-05-27T04:54:22.817609Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:22.817615Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:22.817619Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:22.817623Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:22.817627Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:22.817632Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:22.817636Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:22.817641Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:22.817645Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:22.818107Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:22.818209Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:22.824010Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:22.824811Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:22.825026Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:22.825179Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:22.825365Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.825977Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826068Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826142Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826260Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826326Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826445Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826509Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826624Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.826711Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.827066Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.827356Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.827579Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.827787Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.827871Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.828293Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.828815Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830344Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831032Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831504Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:22.831818Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831920Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832040Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832119Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832245Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832316Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832435Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832500Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832614Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832722Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833034Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833414Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833543Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833607Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833752Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833818Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833927Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833993Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834104Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834166Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834279Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834392Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834638Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835096Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835211Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835274Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835386Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835456Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835852Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835938Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836056Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836145Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836403Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836824Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836940Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837007Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837128Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837198Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837311Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837390Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837508Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837576Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837727Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837794Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838100Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838567Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838693Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838765Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838879Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838946Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.839059Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.839123Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.839230Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.839295Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.841011Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.841579Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.841743Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.841820Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.841934Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.842000Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.842110Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.842176Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.842287Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.842352Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.842474Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.842549Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.842777Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.842929Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.843902Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.844502Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.844671Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.844742Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.844849Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.844912Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.845023Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.845084Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.862663Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.863133Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.863283Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.863557Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.864730Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.864922Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.865129Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.865281Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.865477Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.865722Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.865920Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.866007Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.866190Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:22.866546Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.867689Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.868568Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.869693Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.870761Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.871969Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.875514Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T04:54:22.879970Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T04:54:22.880953Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T04:54:22.886100Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T04:54:22.888952Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T04:54:22.891225Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T04:54:22.892605Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T04:54:22.893715Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T04:54:23.760174Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.761309Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.764232Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T04:54:23.875538Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.876677Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.879975Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T04:54:23.880654Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.881481Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.884105Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T04:54:24.096049Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.097155Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.100366Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T04:54:24.161296Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.161413Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.162463Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.162819Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.166722Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T04:54:24.167965Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T04:54:24.278140Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.279293Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.282758Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T04:54:24.287611Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.288592Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.291788Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T04:54:24.453690Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.454961Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.458263Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T04:54:24.519706Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.520931Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.524027Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T04:54:24.585375Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.586480Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.589550Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T04:54:24.651041Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.652119Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.655228Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T04:54:24.916951Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.917989Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.921028Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T04:54:25.082528Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.083591Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.086886Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T04:54:25.091855Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.092820Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.095776Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T04:54:25.125267Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.126343Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.129741Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T04:54:25.441569Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.443036Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.446569Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T04:54:25.447528Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.448784Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.451427Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T04:54:25.513000Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.514590Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.517888Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T04:54:25.578940Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.580689Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.584024Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T04:54:25.645071Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.645148Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.645962Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.646527Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.649998Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T04:54:25.651399Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T04:54:25.711346Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.712436Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.715165Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T04:54:25.776877Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.777991Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.781149Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T04:54:25.842574Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.843647Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.846869Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T04:54:25.859988Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.861010Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.863713Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T04:54:25.893117Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.894124Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.897274Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T04:54:25.958589Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.959615Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.962918Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T04:54:26.124371Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.125482Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.128295Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T04:54:26.189914Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.190023Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.190993Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.191503Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.195384Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T04:54:26.196588Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T04:54:26.357193Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.358135Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.361445Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T04:54:26.422677Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.423798Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.427290Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T04:54:26.588808Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.589864Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.593203Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T04:54:26.754709Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.755661Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.756644Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.759471Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.760246Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T04:54:26.762782Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T04:54:26.824128Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.825138Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.828420Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T04:54:26.890077Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.891125Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.894102Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T04:54:26.955607Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.956545Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.960075Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T04:54:27.221804Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.222694Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.225925Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T04:54:27.286989Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.287993Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.291683Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T04:54:27.654105Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.655222Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.658662Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T04:54:27.719722Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.720722Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.723463Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T04:54:27.785065Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.786025Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.788967Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T04:54:27.850371Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.851258Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.854746Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T04:54:27.916031Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.916890Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.920059Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T04:54:27.924855Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.925646Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.928545Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T04:54:27.929434Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.930160Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.932921Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T04:54:27.994316Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.995307Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.998448Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T04:54:28.461336Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.462455Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.466215Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T04:54:28.495434Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.496549Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.501004Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T04:54:28.504949Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.505842Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.508940Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T04:54:28.570138Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.571439Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.574715Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T04:54:28.736294Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.737626Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.740968Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T04:54:28.802054Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.803227Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.806901Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T04:54:28.835563Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.836684Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.840251Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T04:54:28.869215Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.870354Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.873441Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T04:54:28.902772Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.903789Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.906899Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T04:54:28.911724Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.912720Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.916395Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T04:54:29.428730Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.428822Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.429640Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.430148Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.433506Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T04:54:29.434577Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T04:54:29.435467Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.436188Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.438757Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T04:54:29.468588Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.468690Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.469410Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.469755Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.473308Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T04:54:29.474200Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T04:54:29.477989Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.478671Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.481879Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T04:54:29.543304Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.544141Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.547858Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T04:54:29.609088Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.609195Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.609900Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.610351Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.614356Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T04:54:29.615140Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.615670Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T04:54:29.616100Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.618863Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T04:54:29.680445Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.680551Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.681242Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.681517Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.684898Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T04:54:29.685909Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T04:54:29.713956Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.714075Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.714819Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.715170Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.718007Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T04:54:29.719066Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T04:54:29.779403Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.779495Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.780138Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.780408Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.783909Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T04:54:29.785185Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T04:54:29.813045Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.813733Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.816923Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T04:54:29.821440Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.822017Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.825061Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T04:54:29.854024Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.854775Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.857711Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T04:54:29.870632Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.871247Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.874035Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T04:54:29.886984Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.887078Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.887619Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.888122Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.891038Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T04:54:29.892212Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T04:54:29.920470Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.921160Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.922987Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.923913Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T04:54:29.924380Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.956533Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.673122Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.673747Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.676553Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T04:54:30.706189Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.722124Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.722739Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.725800Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T04:54:30.787155Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.787254Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.787813Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.790949Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T04:54:30.852236Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.852331Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.852894Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.856399Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T04:54:30.917243Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.981770Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.982287Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.984835Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T04:54:31.046360Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.046726Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.046902Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.047207Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.047890Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.052141Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:31.053494Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:31.054298Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:31.081581Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.081676Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.081704Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.081958Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.082245Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.085119Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:31.086001Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:31.146752Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.146860Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.147118Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.150025Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:31.179469Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.449255Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:41.705904Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:41.705904Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] 
[2026-05-27T04:54:41.705904Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:41.705971Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] 
[2026-05-27T04:54:41.705979Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:41.705988Z] [nf-3c435cb42eeb7ab15733f727b318c8de-b0467-h7zq9] [609_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec