File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/deb34c19527d090389ebc81daad510/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
[2026-05-27T04:54:27.619450Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:27.620080Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:27.620092Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:27.620097Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:27.620101Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX1GJxYQ'
[2026-05-27T04:54:27.620105Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:27.620110Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:27.620114Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:27.620118Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:27.620123Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:27.620127Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:27.620131Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:27.620136Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:27.620139Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:27.620692Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:27.620812Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:27.626653Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:27.627326Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:27.627644Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:27.627776Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:27.627986Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.628686Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.628773Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.628844Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.628960Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.629028Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.629351Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.629612Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.629693Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.630321Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.630933Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.632451Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.632946Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:27.633083Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.633464Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.633533Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.633650Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.633714Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.633825Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.633888Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.634075Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.634143Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.634256Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.634330Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.634590Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.634923Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635051Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635115Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635224Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635291Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635400Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635514Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635633Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635699Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635810Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.635874Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.636058Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.636487Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.636598Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.636664Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.636774Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.636836Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.636945Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.637014Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.637119Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.637181Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.637292Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.637356Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.637572Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638114Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638226Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638293Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638402Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638464Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638574Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638637Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638746Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638809Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638915Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.638979Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.639102Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.639236Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.639825Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.639891Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.639998Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640065Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640175Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640241Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640347Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640412Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640519Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640580Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640684Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.640750Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.659222Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.659706Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.659797Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.660006Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.660082Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.660171Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.660239Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.660355Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.660429Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:27.660479Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:27.668758Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.669418Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.669713Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.670135Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.670506Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.671164Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.672314Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.673631Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.674649Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.680672Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:27.682829Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T04:54:27.685183Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:27.685671Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T04:54:27.689145Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:27.691081Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:27.692903Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:27.694335Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:27.741801Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.742616Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.746029Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T04:54:27.750409Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.751233Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.753834Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T04:54:27.767218Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.768045Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.771123Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T04:54:27.832449Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.833368Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.836770Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T04:54:28.198609Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.199568Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.202471Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T04:54:28.264181Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.265154Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.268384Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T04:54:28.680526Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.681767Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.685283Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T04:54:28.746347Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.747543Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.750761Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:28.812070Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.813463Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.816611Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T04:54:28.928197Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.929810Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.934101Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T04:54:29.144890Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.145978Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.148745Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T04:54:29.210325Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.211377Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.214235Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T04:54:29.215179Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.215938Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.218535Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:29.231819Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.232608Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.235322Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:29.264678Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.266212Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.266604Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.268202Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.271699Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T04:54:29.272171Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T04:54:29.300645Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.301940Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.305462Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T04:54:29.517323Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.518394Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.521973Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T04:54:29.583568Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.584529Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.587847Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T04:54:30.100587Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.101737Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.105113Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T04:54:30.166498Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.167365Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.170281Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:30.231830Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.232780Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.236014Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:30.297352Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.298263Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.301931Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:30.362916Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.363044Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.363111Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.363933Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.364218Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.364702Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.368121Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T04:54:30.369513Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:30.372444Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T04:54:30.397726Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.398495Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.401501Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T04:54:30.402153Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.402806Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.405746Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:30.467200Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.468101Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.470865Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T04:54:30.471735Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.472314Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.474895Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:30.504285Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.505118Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.508454Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T04:54:30.538285Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.539296Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.541349Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.542607Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:30.542743Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.545968Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T04:54:30.607240Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.607362Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.608116Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.608485Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.611777Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T04:54:30.613160Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T04:54:30.641185Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.642236Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.642486Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.644724Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.645376Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T04:54:30.648046Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T04:54:30.677081Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.677784Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.681085Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:30.892610Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.893371Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.896204Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T04:54:30.957796Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.958521Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.961821Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T04:54:31.624726Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.625467Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.628801Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T04:54:31.840830Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.841637Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.844915Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T04:54:31.956361Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.956458Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.957105Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.957900Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.961105Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T04:54:31.962179Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T04:54:32.023808Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.023914Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.023943Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.024577Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.026842Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.027650Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.027865Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T04:54:32.030835Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:32.031278Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T04:54:32.060546Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.061289Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.063710Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.063835Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.064459Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.065104Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.066209Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:32.067231Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:32.069408Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T04:54:32.098710Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.099385Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.103009Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T04:54:32.132136Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.132727Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.135642Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:32.347615Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.348258Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.351027Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:32.380493Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.381198Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.383839Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T04:54:32.445562Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.445667Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.446233Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.446555Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.449622Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T04:54:32.450861Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T04:54:32.511383Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.512039Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.515069Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:32.576503Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.577160Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.580195Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T04:54:32.641343Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.641448Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.641926Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.644906Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:32.706488Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.971465Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.972017Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.974782Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T04:54:33.003961Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.068237Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.068800Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.071283Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T04:54:33.100878Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.767742Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.767841Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.768291Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.768938Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.771836Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:33.801031Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T04:54:33.801650Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.802349Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.117012Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.117521Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.120079Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T04:54:34.133329Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.133782Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.136159Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T04:54:34.165779Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.165866Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.166116Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.166257Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.166954Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.167266Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.170930Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:34.173214Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:34.194604Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:34.199795Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.199843Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.199865Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.200076Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.200327Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.203398Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:34.204467Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:34.233074Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.233142Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.233323Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.235860Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:34.265380Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.188849Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:46.508484Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:46.508484Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] 
[2026-05-27T04:54:46.508484Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:46.508535Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] 
[2026-05-27T04:54:46.508547Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:46.508554Z] [nf-23deb34c19527d090389ebc81daad510-a7724-c4rtq] [673_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec