File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/38e8fb2e580398a677671f258a4d58/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr1_68991-70108.bed)
Attempt

Content

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[2026-05-27T04:54:28.611582Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:28.612591Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:28.612602Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:28.612606Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:28.612611Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXNNcgGM'
[2026-05-27T04:54:28.612615Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:28.612620Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:28.612624Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:28.612628Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:28.612632Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:28.612636Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:28.612641Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:28.612645Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:28.612650Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:28.612979Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:28.613065Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:28.618850Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:28.619559Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:28.619722Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:28.619901Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:28.620276Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.620816Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.620958Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.621053Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.621210Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.621297Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.621738Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.621897Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.622007Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.622303Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.622708Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.624748Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.625616Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.625900Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:28.626055Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.626149Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.626293Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.626378Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.626523Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.626604Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.626944Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.627212Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.627412Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.627592Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.627920Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.627999Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.628147Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.628229Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.628375Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.628494Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.628638Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.628744Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.629000Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.629452Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.629598Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.629680Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.629829Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.629916Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.630058Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.630135Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.630283Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.630364Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.630743Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.631070Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.631672Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.631755Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.631902Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.631989Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.632291Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.632927Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.633152Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.633254Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.633412Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.633496Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.633698Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.633792Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.634276Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.634763Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.634920Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.635008Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.635195Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.635276Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.635459Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.635546Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.635698Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.635836Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.636408Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.637272Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.657442Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.657777Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.658013Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.658137Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.659239Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.659359Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.659529Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.659661Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.661904Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.662231Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.662635Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.663153Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.663564Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.663925Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.664499Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.664925Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.665421Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:28.666582Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.667302Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.672551Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T04:54:28.676296Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T04:54:28.682817Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:28.687636Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T04:54:28.689538Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T04:54:28.691073Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T04:54:28.756573Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:28.762676Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:28.796278Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.796355Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.796382Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.797620Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.798065Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.798648Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.804824Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:28.805073Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T04:54:29.567023Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.568084Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.571461Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T04:54:29.883175Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.884404Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.887598Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T04:54:30.851570Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.852456Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.855576Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:30.916616Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.916720Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.917509Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.917953Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.921600Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:30.922387Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T04:54:30.951756Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.952623Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.955508Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:30.984700Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.985680Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.988805Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T04:54:31.018152Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.018987Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.021893Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T04:54:31.035504Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.036236Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.039109Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T04:54:31.068324Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.069470Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.069726Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.071836Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.072379Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T04:54:31.074731Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:31.104237Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.104345Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.105086Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.105510Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.108653Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T04:54:31.109633Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T04:54:31.170086Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.170938Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.173917Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T04:54:31.203234Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.204061Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.207077Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:31.551958Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:31.569292Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.569391Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.570030Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.570312Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.573762Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:31.574651Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T04:54:31.604572Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.605363Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.608194Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T04:54:31.970438Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.971209Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.974066Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T04:54:31.987003Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.987695Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.990764Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T04:54:32.019997Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.020743Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.023664Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:32.036965Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.037674Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.040547Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T04:54:32.069793Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.070548Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.073323Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T04:54:32.134646Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.135502Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.139344Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:32.652140Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.652250Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.652920Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.653285Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.657005Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T04:54:32.658193Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T04:54:33.169883Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.170623Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.173543Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T04:54:33.202638Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.203364Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.207028Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:33.267941Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.268664Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.271451Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T04:54:33.332847Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.333612Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.336356Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T04:54:33.397905Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.398607Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.401730Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:33.430690Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.431376Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.434394Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:33.546247Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.546917Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.549968Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T04:54:33.611379Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.611483Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.612115Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.612445Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.615517Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T04:54:33.616545Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T04:54:33.677055Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.677680Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.680853Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:33.709964Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.710617Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.713335Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T04:54:33.742533Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.743201Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.746094Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:33.907768Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.908362Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.911663Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T04:54:33.972853Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.972954Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.973543Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.973828Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.976937Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T04:54:33.977841Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:34.038248Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.038374Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.038924Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.039238Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.042383Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T04:54:34.043487Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T04:54:34.104072Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.104670Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.107528Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:34.136969Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.137562Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.140703Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:34.169830Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.170772Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.171011Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.171796Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.174884Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T04:54:34.176476Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:34.238034Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.238617Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.241782Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:34.302849Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.303407Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.306595Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:34.367798Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.482159Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.482684Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.485615Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T04:54:34.514595Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.629022Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.629533Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.632330Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:34.693952Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.908477Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.908985Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.911991Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:34.941464Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.945007Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.945343Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.948053Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:34.977570Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.492880Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.493328Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.496119Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T04:54:35.525430Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.789964Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.790019Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.790340Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.790758Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.793271Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T04:54:35.793904Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T04:54:35.822647Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.822706Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.822903Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.823021Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.823434Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.823925Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.826934Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:35.828616Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:35.829042Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:35.856221Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.856282Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.856305Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.856487Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.856903Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.859079Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:35.859941Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:35.889701Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.889758Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.889932Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.892142Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:35.921915Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.243271Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:47.500631Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:47.500631Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] 
[2026-05-27T04:54:47.500631Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:47.500680Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] 
[2026-05-27T04:54:47.500689Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:47.500713Z] [nf-4e38e8fb2e580398a677671f258a4d58-d365a-klxlz] [609_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec