Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2dddebc49f61281d087cd9d6278019/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/d5818a83b9029a4eaca1107ae554f8/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/d5818a83b9029a4eaca1107ae554f8/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/2dddebc49f61281d087cd9d6278019/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T04:54:28.184239Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:28.184849Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:28.184861Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:28.184866Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:28.184871Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXKANFLN'
[2026-05-27T04:54:28.184878Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:28.184883Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:28.184888Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:28.184893Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:28.184897Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:28.184901Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:28.184906Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:28.184909Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:28.184914Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:28.185365Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:28.185506Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:28.191397Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:28.192089Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:28.192287Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:28.192493Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:28.192738Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193056Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193146Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193221Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193339Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193404Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193523Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193586Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193699Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193763Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193938Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.194336Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.194556Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.194696Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.194831Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.195544Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.195979Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.197840Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.198166Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:28.198563Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.198906Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.198998Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.199125Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.199209Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.199448Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.199655Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.200286Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.200487Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.200604Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.200672Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.200783Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.200851Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.201018Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.201131Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.201248Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.201315Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.201432Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.201548Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.201886Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.202252Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.202435Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.202814Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.202930Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.202995Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.203454Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.203521Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.203640Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.203707Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.203981Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.204395Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.204516Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.204582Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.204692Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.204756Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.204866Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.204926Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.205040Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.205106Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.205217Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.205283Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.205395Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.205458Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.205714Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.206213Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.206347Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.206417Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.206526Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.206591Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.221803Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.221917Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.221990Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.222152Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.222223Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.222310Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.222384Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.224052Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.224146Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.224200Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:28.226325Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.227035Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.227242Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.227606Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.228094Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.228468Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.229029Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.229927Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.230869Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.234746Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T04:54:28.240051Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T04:54:28.244347Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T04:54:28.245179Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T04:54:28.249779Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T04:54:28.250287Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:28.250351Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:28.250520Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:28.998883Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.999904Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.003473Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:29.064700Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.065610Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.068846Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:29.180585Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.181670Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.184752Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T04:54:29.396448Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.396540Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.397312Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.397596Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.401890Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T04:54:29.402729Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T04:54:30.365164Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.366236Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.369285Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:30.581129Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.581225Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.582013Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.582448Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.585813Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:30.587010Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:30.647214Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.647320Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.648145Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.648671Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.652372Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T04:54:30.653284Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:30.715279Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.715373Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.716194Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.716709Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.719804Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:30.721015Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T04:54:30.781481Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.782361Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.785168Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:30.846781Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.847627Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.850640Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T04:54:30.864430Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.865266Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.868253Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T04:54:30.897667Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.898600Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.898894Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.901604Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.902434Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T04:54:30.905229Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:30.934528Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.935665Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.936027Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.937229Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.940519Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T04:54:30.941527Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T04:54:31.352556Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.353687Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356926Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:31.418055Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.419061Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.422269Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T04:54:31.784172Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.785087Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.787806Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:31.849222Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.849332Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.850188Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.850593Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.853904Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T04:54:31.854857Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T04:54:31.882876Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.884183Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.887024Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T04:54:31.948396Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.949356Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.952540Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:31.953351Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.954246Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.957013Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T04:54:32.018548Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.019772Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.022965Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T04:54:32.134312Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.135187Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.138452Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:32.199658Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.200545Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.203697Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T04:54:32.264992Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.265697Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.268600Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T04:54:32.329812Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.330780Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.334050Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T04:54:32.445388Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.446092Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.449400Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T04:54:32.861936Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.862685Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.865637Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T04:54:32.894955Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.895682Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.898824Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T04:54:32.927934Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.928642Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.929169Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.931254Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.933033Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:32.934081Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T04:54:32.963794Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.963904Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.964485Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.964995Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.968455Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:32.969090Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:33.029728Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.030359Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.033574Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:33.094849Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.095510Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.098441Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:33.159858Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.160557Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.163806Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T04:54:33.192742Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.193308Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.196343Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T04:54:33.257775Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.258463Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.261227Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:33.290602Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.291298Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.293895Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:33.323682Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.324349Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.327039Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T04:54:33.356344Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.357032Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.359778Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T04:54:33.521594Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.522271Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.524887Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:33.554519Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.555159Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.558281Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T04:54:33.619523Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.619622Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.620170Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.620504Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.623551Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T04:54:33.624674Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T04:54:33.652697Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.653212Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.655846Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:33.685191Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.849902Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.850466Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.853465Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:33.914515Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.079189Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.079737Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.082964Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T04:54:34.087760Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.088220Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.090605Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T04:54:34.120217Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.120316Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.184402Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.184872Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.187295Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T04:54:34.217043Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.531781Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.532253Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.534920Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:34.564153Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.628307Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.628697Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.631232Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T04:54:34.660656Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.226223Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.226650Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.229054Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T04:54:35.258687Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.258952Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.259088Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.259316Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.259930Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.263596Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:35.264971Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:35.265807Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:35.293580Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.293651Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.293675Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.293869Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.295363Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.295915Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:35.297850Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:35.327361Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.327444Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.327630Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.329845Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:35.359482Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.781863Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:47.073062Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:47.073062Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] 
[2026-05-27T04:54:47.073062Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:47.073122Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] 
[2026-05-27T04:54:47.073128Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:47.073135Z] [nf-d22dddebc49f61281d087cd9d6278019-2a758-5hcnq] [713_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec