Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/4b82575e1ec92d83486aaa9b110ee9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4a/4b82575e1ec92d83486aaa9b110ee9/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-rp5mw53k because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:58:44,077 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:58:44,871 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:58:45,043 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:58:45,959 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:58:46,115 - cnv_pipe.batch.run_model - INFO - Processing cluster 891 with 151 probes
2026-05-27 04:58:46,497 - cnv_pipe.batch.run_model.cluster891 - INFO - Child process started for cluster 891 with 151 probes
2026-05-27 04:59:32,678 - cnv_pipe.batch.run_model.cluster891 - INFO - Child process finished cluster 891. Wrote cluster_891_samples.csv and cluster_891_params.csv
2026-05-27 04:59:32,679 - cnv_pipe.batch.run_model - INFO - Cluster 891 finished in 46.56 seconds. Status: SUCCESS