Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/cf87c4473133088f23ef3264b07eb1/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/3c4be24150a8745172b27c7cc104ed/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/3c4be24150a8745172b27c7cc104ed/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/cf87c4473133088f23ef3264b07eb1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr1_68991-70108.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T04:54:31.339300Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:31.340222Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:31.340234Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:31.340239Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:31.340243Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXK4vxWt'
[2026-05-27T04:54:31.340248Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:31.340256Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:31.340261Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:31.340266Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:31.340271Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:31.340274Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:31.340277Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:31.340283Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:31.340287Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:31.340800Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:31.340932Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:31.347933Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:31.348554Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:31.348768Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:31.348976Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:31.349248Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.349599Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.349693Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.349768Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.349890Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.349959Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.350077Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.350140Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.350256Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.350525Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.350883Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.351056Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.351398Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.351944Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.353866Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.354100Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:31.354488Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.354576Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.354693Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.354757Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.354955Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.355020Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.355132Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.355201Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.355314Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.355442Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.355836Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.355904Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356014Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356085Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356194Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356262Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356380Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356444Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356595Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356684Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356817Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.356943Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.357384Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.357689Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.357813Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.357874Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.357990Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.358057Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.358536Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.358600Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.358721Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.358849Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.359245Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.359699Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.359902Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.360338Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.360841Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.360908Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361020Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361087Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361199Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361267Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361375Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361439Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361551Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361611Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361720Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361808Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.361980Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.362754Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.362994Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.363090Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.380356Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.380492Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.380590Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.380802Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.380883Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.380994Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.382478Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.382696Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.382960Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.383689Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:31.384782Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.385835Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.386232Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.386876Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.388396Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.390984Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.393142Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T04:54:31.396678Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:31.400073Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.400480Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:31.405254Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:31.406117Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.410311Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T04:54:31.411106Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.418082Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:31.422034Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T04:54:31.422466Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:31.529306Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.529405Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.529432Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.529465Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.530407Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.530755Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.531215Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.531807Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.535255Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:31.538051Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T04:54:31.539599Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T04:54:31.540221Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T04:54:31.597238Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.598279Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.602952Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T04:54:32.114839Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.115865Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.119141Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T04:54:32.180610Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.181882Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.185244Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T04:54:32.597471Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.598338Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.602374Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T04:54:32.964148Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.965143Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.968349Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T04:54:33.881884Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.882972Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.886395Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T04:54:34.599622Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.600666Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.603938Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:34.765575Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.765696Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.766877Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.767267Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.770759Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T04:54:34.771681Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T04:54:34.801587Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.803104Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.806386Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T04:54:34.807022Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.807959Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.810742Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T04:54:34.872125Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.873177Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.876212Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T04:54:34.876992Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.878500Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.881917Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T04:54:35.093523Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.095539Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.099660Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T04:54:35.712093Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.713238Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.716938Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:36.078702Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.078826Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.080128Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.080739Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.084894Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T04:54:36.085645Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T04:54:36.113719Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.114961Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.117904Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T04:54:36.131014Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.132307Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.135449Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T04:54:36.164602Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.165804Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.169351Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T04:54:36.169947Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.170747Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.173873Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T04:54:36.435451Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.436789Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.439506Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:36.501209Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.502360Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.504976Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:36.566528Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.567630Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.570643Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:36.632303Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.633641Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.636886Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:36.798467Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.799926Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.803101Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T04:54:36.864349Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.865618Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.868682Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T04:54:36.930192Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.931550Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.934868Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T04:54:37.346955Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.347112Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.347767Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.348065Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.350873Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T04:54:37.351600Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T04:54:37.412600Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.412736Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.413509Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.413999Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.417410Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:37.418398Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:37.579309Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.580024Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.583040Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:37.644298Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.645075Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.648090Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:37.677538Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.677646Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.678259Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.678593Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.681389Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T04:54:37.681924Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:37.710651Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.711596Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.711831Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.713673Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.715013Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:37.716206Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T04:54:37.745798Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.746735Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.746954Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.749022Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.749632Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T04:54:37.751610Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:37.781232Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.782214Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.782624Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.783333Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.785955Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T04:54:37.786694Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T04:54:37.815479Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.816066Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.818571Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:37.848071Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.848639Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.851154Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T04:54:37.880767Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.881324Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.884208Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:37.889518Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.890034Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.892715Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:38.104674Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.105419Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.108031Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T04:54:38.137513Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.201831Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.202532Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.205116Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T04:54:38.266724Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.298895Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.299586Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.302611Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:38.331708Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.347668Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.348241Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.351290Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T04:54:38.380353Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.347168Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.347655Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.350480Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T04:54:39.379561Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.443546Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.443627Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.443975Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.444245Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.446638Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:39.447519Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:39.476334Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.476398Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.476774Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.478903Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:39.492426Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.492832Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.494924Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:39.508641Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.540527Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.540747Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.540868Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.541143Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.541561Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.544268Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:39.545512Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:39.546310Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:39.574059Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.574123Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.574147Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.574333Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.574697Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.576932Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:39.577946Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:39.607463Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.607523Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.607692Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.610189Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:39.639832Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.959410Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:50.229077Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:50.229077Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] 
[2026-05-27T04:54:50.229077Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:50.229143Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] 
[2026-05-27T04:54:50.229150Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:50.229157Z] [nf-e4cf87c4473133088f23ef3264b07eb1-69be7-52wlq] [607_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec