cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 0.0s, est remaining 0.7s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 1474
progress 10% @chr2:19997134, elapsed 0.1s, est remaining 0.7s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 321
progress 15% @chr2:188996398, elapsed 0.1s, est remaining 0.6s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 10718
progress 20% @chr3:97992852, elapsed 0.2s, est remaining 0.6s, peak mem 162MB, user 0.0s, sys 0.0s, output queue size 21205
progress 25% @chr4:88439874, elapsed 0.2s, est remaining 0.6s, peak mem 164MB, user 0.0s, sys 0.0s, output queue size 31448
progress 30% @chr5:147401540, elapsed 0.2s, est remaining 0.5s, peak mem 174MB, user 0.0s, sys 0.0s, output queue size 4274
progress 35% @chr6:127119291, elapsed 0.3s, est remaining 0.5s, peak mem 174MB, user 0.0s, sys 0.0s, output queue size 14215
progress 40% @chr7:128774498, elapsed 0.3s, est remaining 0.4s, peak mem 174MB, user 0.0s, sys 0.0s, output queue size 23708
progress 45% @chr9:977002, elapsed 0.3s, est remaining 0.4s, peak mem 300MB, user 0.0s, sys 0.0s, output queue size 33084
progress 50% @chr10:32016829, elapsed 0.4s, est remaining 0.4s, peak mem 302MB, user 0.0s, sys 0.1s, output queue size 43017
progress 55% @chr11:48216810, elapsed 0.4s, est remaining 0.3s, peak mem 302MB, user 0.0s, sys 0.1s, output queue size 53479
progress 60% @chr12:22055455, elapsed 0.4s, est remaining 0.3s, peak mem 302MB, user 0.0s, sys 0.1s, output queue size 63033
progress 65% @chr13:49220338, elapsed 0.5s, est remaining 0.3s, peak mem 302MB, user 0.0s, sys 0.1s, output queue size 74088
progress 70% @chr15:42730598, elapsed 0.5s, est remaining 0.2s, peak mem 302MB, user 0.0s, sys 0.1s, output queue size 84131
progress 75% @chr16:30781718, elapsed 0.6s, est remaining 0.2s, peak mem 302MB, user 0.0s, sys 0.1s, output queue size 93688
progress 80% @chr17:42562612, elapsed 0.6s, est remaining 0.2s, peak mem 302MB, user 0.0s, sys 0.1s, output queue size 104373
progress 85% @chr19:5679586, elapsed 0.6s, est remaining 0.1s, peak mem 339MB, user 0.0s, sys 0.1s, output queue size 114779
progress 90% @chr19:55712420, elapsed 0.7s, est remaining 0.1s, peak mem 339MB, user 0.0s, sys 0.1s, output queue size 124278
progress 95% @chr22:36937342, elapsed 1.0s, est remaining 0.1s, peak mem 2519MB, user 6.1s, sys 1.7s, output queue size 3225
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 1.0s, est remaining 0.0s, peak mem 2519MB, user 6.2s, sys 1.7s, output queue size 9139
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 51395954
reads: 1001089
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1.762 user 0.043 sys 2.125 real
done: 1 calls 0.284 user 0.050 sys 0.341 real
execute: 1 calls 0.009 user 0.001 sys 1.053 real
fetch_reads: 208647 calls 0.078 user 0.000 sys 0.147 real
fetch_ref: 2042 calls 0.029 user 0.009 sys 0.017 real
fetch_vcf: 2042 calls 0.927 user 0.023 sys 0.932 real
idle: 92 calls 0.003 user 0.001 sys 31.596 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 2207 calls 3.967 user 1.589 sys 6.041 real
overall: 2641584128 mem 10.048 user 9.819 sys 2.414 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory