Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/53c05bf532c5a8b4c3826c8599f8d3/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/53c05bf532c5a8b4c3826c8599f8d3/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-dkoti73f because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:58:43,530 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:58:44,342 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:58:44,523 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:58:45,492 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:58:45,672 - cnv_pipe.batch.run_model - INFO - Processing cluster 881 with 190 probes
2026-05-27 04:58:46,057 - cnv_pipe.batch.run_model.cluster881 - INFO - Child process started for cluster 881 with 190 probes
2026-05-27 04:59:42,649 - cnv_pipe.batch.run_model.cluster881 - INFO - Child process finished cluster 881. Wrote cluster_881_samples.csv and cluster_881_params.csv
2026-05-27 04:59:42,650 - cnv_pipe.batch.run_model - INFO - Cluster 881 finished in 56.98 seconds. Status: SUCCESS