cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta -t 12 --interval chr14_64122012-64122133.bed.gz -i HCC1395_BL.recalibrated.bam --algo Haplotyper -d dbsnp_146.hg38.vcf.gz --emit_mode variant germline_control_1.haplotyper.chr14_64122012-64122133.bed.unfiltered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr14:100880712, elapsed 0.0s, est remaining 0.7s, peak mem 82MB, user 0.0s, sys 0.1s, output queue size 2356
progress 10% @chr15:40895938, elapsed 0.1s, est remaining 0.6s, peak mem 90MB, user 0.0s, sys 0.2s, output queue size 2506
progress 15% @chr15:63774694, elapsed 0.1s, est remaining 0.6s, peak mem 102MB, user 0.1s, sys 0.4s, output queue size 5123
progress 20% @chr15:87989891, elapsed 0.1s, est remaining 0.6s, peak mem 111MB, user 0.1s, sys 0.5s, output queue size 7415
progress 25% @chr16:1947194, elapsed 0.2s, est remaining 0.5s, peak mem 121MB, user 0.1s, sys 0.6s, output queue size 9095
progress 30% @chr16:23482923, elapsed 0.2s, est remaining 0.5s, peak mem 132MB, user 0.1s, sys 0.7s, output queue size 11574
progress 35% @chr16:66536964, elapsed 0.2s, est remaining 0.5s, peak mem 141MB, user 0.2s, sys 0.8s, output queue size 14178
progress 40% @chr16:89286670, elapsed 0.3s, est remaining 0.4s, peak mem 153MB, user 0.2s, sys 1.0s, output queue size 16653
progress 45% @chr17:10313158, elapsed 0.3s, est remaining 0.4s, peak mem 163MB, user 0.3s, sys 1.2s, output queue size 19273
progress 50% @chr17:36331282, elapsed 0.4s, est remaining 0.4s, peak mem 175MB, user 0.3s, sys 1.3s, output queue size 21868
progress 55% @chr17:45102951, elapsed 0.4s, est remaining 0.3s, peak mem 180MB, user 0.3s, sys 1.4s, output queue size 24106
progress 60% @chr17:68347125, elapsed 0.5s, est remaining 0.3s, peak mem 193MB, user 0.4s, sys 1.5s, output queue size 26638
progress 65% @chr18:5489001, elapsed 0.5s, est remaining 0.3s, peak mem 208MB, user 0.4s, sys 1.7s, output queue size 29356
progress 70% @chr18:62574057, elapsed 0.5s, est remaining 0.2s, peak mem 217MB, user 0.5s, sys 1.9s, output queue size 31737
progress 75% @chr19:6919548, elapsed 0.6s, est remaining 0.2s, peak mem 226MB, user 0.5s, sys 2.1s, output queue size 34124
progress 80% @chr19:15256964, elapsed 0.6s, est remaining 0.2s, peak mem 235MB, user 0.5s, sys 2.3s, output queue size 36380
progress 85% @chr19:36936746, elapsed 0.6s, est remaining 0.1s, peak mem 246MB, user 0.5s, sys 2.5s, output queue size 38698
progress 90% @chr19:46493558, elapsed 0.7s, est remaining 0.1s, peak mem 258MB, user 0.6s, sys 2.6s, output queue size 40869
progress 95% @chr20:36934998, elapsed 0.7s, est remaining 0.0s, peak mem 267MB, user 0.6s, sys 2.8s, output queue size 43511
progress 100% @chr20:63695066, elapsed 0.8s, est remaining 0.0s, peak mem 277MB, user 0.6s, sys 2.9s, output queue size 45944
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 12 max 192
algo: Haplotyper
license: sentieon:Haplotyper=12
input file size: 71637313
output file size: 22308
reads: 1001089
contig: 48152 intervals 9000028 bases
active: 97912 calls 0.000 user 0.015 sys 0.018 real
advance: 49760 calls 0.035 user 0.017 sys 0.024 real
calc: 97912 calls 0.000 user 0.016 sys 0.018 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.006 user 0.001 sys 1.437 real
fetch: 97912 calls 0.000 user 0.009 sys 0.018 real
fetch_ref: 97912 calls 0.106 user 0.059 sys 0.370 real
idle: 39 calls 0.004 user 0.020 sys 20.450 real
init: 1 calls 0.039 user 0.001 sys 0.041 real
region: 97912 calls 0.002 user 0.000 sys 0.020 real
tracker: 97912 calls 0.019 user 0.005 sys 0.087 real
overall: 294391808 mem 1.179 user 4.766 sys 2.554 real
ls: cannot access '*.g.vcf.gz': No such file or directory
ls: cannot access '*.g.vcf.gz.tbi': No such file or directory