Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/46241cf768ee49674af179d0211b9e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f2/46241cf768ee49674af179d0211b9e/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-oyw0pypw because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:59:38,577 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:59:39,355 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:59:39,523 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:59:40,512 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:59:40,692 - cnv_pipe.batch.run_model - INFO - Processing cluster 1158 with 185 probes
2026-05-27 04:59:41,061 - cnv_pipe.batch.run_model.cluster1158 - INFO - Child process started for cluster 1158 with 185 probes
2026-05-27 05:00:35,648 - cnv_pipe.batch.run_model.cluster1158 - INFO - Child process finished cluster 1158. Wrote cluster_1158_samples.csv and cluster_1158_params.csv
2026-05-27 05:00:35,649 - cnv_pipe.batch.run_model - INFO - Cluster 1158 finished in 54.96 seconds. Status: SUCCESS