File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/240cb957c66037201a31fedc3fb387/.command.err
Size
53.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr16_25246607-25247490.bed)
Attempt

Content

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[2026-05-27T04:54:31.289153Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:31.289897Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:31.289909Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:31.289914Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:31.289918Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXjhBGrq'
[2026-05-27T04:54:31.289921Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:31.289926Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:31.289930Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:31.289934Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:31.289937Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:31.289941Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:31.289945Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:31.289948Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:31.289952Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:31.290512Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:31.290583Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:31.296441Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:31.297163Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:31.297383Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:31.297605Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:31.297927Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.298777Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.298880Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.298953Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.299310Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.299630Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.299794Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.300038Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.300125Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.300257Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.300338Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.300915Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.301407Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.303214Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:31.303372Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.303462Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.303578Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.303646Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.303763Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.303828Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.304126Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.304223Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.304691Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.304951Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305072Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305138Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305254Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305321Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305432Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305501Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305611Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305687Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305803Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.305866Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306168Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306495Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306693Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307089Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307211Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307274Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307390Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307454Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307565Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307633Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307739Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307802Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307916Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307979Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.308228Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.308669Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.308786Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.308851Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.308962Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309023Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309131Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309196Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324433Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324543Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324609Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324787Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324865Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324945Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325010Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325114Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325184Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325237Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:31.326407Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.327080Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.327722Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.328186Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.328783Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.329922Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.332542Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.339280Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T04:54:31.341824Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:31.342581Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342930Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:31.345883Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T04:54:31.347860Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T04:54:31.348270Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.353063Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T04:54:31.354202Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T04:54:31.356699Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:31.414469Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.415323Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.422176Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T04:54:31.436458Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.437325Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.441273Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T04:54:32.758822Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.759762Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.763183Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T04:54:32.824571Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.825546Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.828815Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T04:54:32.990406Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.991295Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.995090Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T04:54:34.110199Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.111865Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.115037Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T04:54:34.144293Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.145378Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.148579Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T04:54:34.149483Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.150555Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.153300Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:34.214852Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.215051Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.216704Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.217269Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.220720Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T04:54:34.221793Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T04:54:34.281965Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.282873Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.285927Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:34.291011Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.291700Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.294707Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:34.355976Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.356964Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.360603Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T04:54:34.421484Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.422245Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.425313Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T04:54:34.454380Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.455266Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.458886Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T04:54:34.519885Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.520714Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.524390Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T04:54:35.036862Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.037689Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.041926Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T04:54:35.102259Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.103032Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.106989Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T04:54:35.268112Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.268810Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.271813Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T04:54:35.333517Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.334778Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.338150Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T04:54:35.399489Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.400772Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.403959Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T04:54:35.615725Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.616784Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.619969Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:35.681444Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.682217Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.684864Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T04:54:35.746499Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.747570Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.750508Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T04:54:35.811924Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.813169Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.816982Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T04:54:35.877926Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.878992Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.882591Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T04:54:35.943839Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.944758Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.947991Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T04:54:35.952965Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.953744Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.956923Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T04:54:35.985909Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.986706Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.988932Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.990208Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:35.990393Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.993377Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T04:54:36.054671Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.054770Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.054821Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.055498Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.056069Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.056568Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.060485Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T04:54:36.062445Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T04:54:36.063512Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T04:54:36.121779Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.121888Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.121940Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.122969Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.123517Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.124102Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.126684Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T04:54:36.129426Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T04:54:36.130343Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T04:54:36.189957Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.190848Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.194403Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T04:54:36.757378Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.758001Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.761095Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T04:54:36.822570Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.823054Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.826089Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T04:54:36.887281Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.887872Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.891111Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:36.952323Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.367687Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.368346Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.371368Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T04:54:37.372283Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.372930Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.375437Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T04:54:37.404981Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.406809Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.438898Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.439552Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.441930Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T04:54:37.471522Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.836380Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.836956Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.839841Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T04:54:37.901188Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.917150Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.917807Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.920390Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T04:54:37.981864Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.981955Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.982613Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.985214Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:38.046756Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.211186Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.212025Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.214425Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T04:54:38.276210Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.276541Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.276767Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.277152Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.277558Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.282324Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:38.282535Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:38.283241Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:38.310580Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.310665Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.310692Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.310957Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.311240Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.313802Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:38.314414Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:38.343294Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.343383Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.343635Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.345812Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:38.375620Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.898764Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:50.178573Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:50.178573Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] 
[2026-05-27T04:54:50.178573Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:50.178640Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] 
[2026-05-27T04:54:50.178648Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:50.178654Z] [nf-d5240cb957c66037201a31fedc3fb387-89517-8z5t4] [610_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec