File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/634c2e0be150f893214e53bf87b25c/.command.err
Size
68.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr10_74133927-74134264.bed)
Attempt

Content

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[2026-05-27T04:54:31.296979Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:31.298068Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:31.298077Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:31.298081Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:31.298085Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXECbSzt'
[2026-05-27T04:54:31.298089Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:31.298094Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:31.298098Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:31.298101Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:31.298105Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:31.298109Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:31.298112Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:31.298116Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:31.298120Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:31.298553Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:31.298659Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:31.304373Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:31.305447Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:31.305628Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:31.305844Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:31.306097Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306766Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306855Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306929Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307046Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307177Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307516Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307746Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.307859Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.308146Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.308556Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309129Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310875Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311687Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:31.312073Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312221Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312372Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312443Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312563Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312650Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312864Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312934Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313202Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313578Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313751Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313824Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313957Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314027Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314139Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314219Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314364Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314561Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315221Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315685Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315816Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315887Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316002Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316075Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316199Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316262Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316372Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316433Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316544Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316609Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316777Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316966Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317417Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317484Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317647Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317713Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317824Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317887Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317996Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318056Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318168Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318233Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318344Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318464Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318844Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319364Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319549Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319621Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319743Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319810Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319922Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319991Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320101Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320164Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320427Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320963Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321085Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321149Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321257Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321320Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.334868Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.340231Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.340859Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.341131Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.341285Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.341797Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342002Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342317Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342832Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343183Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343692Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343950Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.344636Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.345150Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.346093Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.346508Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.346919Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:31.347970Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.349193Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.353009Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:31.359248Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T04:54:31.362325Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T04:54:31.365119Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T04:54:31.368251Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:31.373447Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:31.373710Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:31.534001Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.534097Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.535098Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.535512Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.539663Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T04:54:31.540667Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T04:54:33.206540Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.206690Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.207588Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.207926Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.212020Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T04:54:33.213196Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T04:54:33.423707Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.425564Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.430195Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:33.591438Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.593371Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.597052Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T04:54:33.808767Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.809972Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.813139Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:33.874395Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.875529Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.878636Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T04:54:33.908148Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.909382Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.912229Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T04:54:33.973807Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.975012Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.978216Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T04:54:34.039352Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.040468Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.043604Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T04:54:34.155072Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.156749Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.160460Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:34.221295Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.221406Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.222539Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.222922Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.226782Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:34.227894Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T04:54:34.287816Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.288984Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.292641Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T04:54:34.654731Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.656658Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.659781Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T04:54:34.814269Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T04:54:34.821519Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.821608Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.822658Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.823043Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.827188Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T04:54:34.828279Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T04:54:35.089473Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.090590Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.093603Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:35.204990Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.206011Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.208900Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T04:54:35.270286Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.271512Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.275152Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:35.336333Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.337469Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.340324Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T04:54:35.401803Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.403208Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.406900Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T04:54:35.468014Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.469053Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.472017Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T04:54:35.633940Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.634049Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.634922Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.635276Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.638364Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:35.639735Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T04:54:35.700057Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.700155Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.701009Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.701312Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.705004Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:35.706201Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T04:54:35.766066Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.766893Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.770966Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T04:54:35.831530Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.832498Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.835970Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:36.549325Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.550164Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.553501Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T04:54:36.765413Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.766364Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.769516Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T04:54:36.830712Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.830819Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.831651Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.832146Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.835652Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T04:54:36.836666Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:36.896752Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.897477Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.900649Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:36.962283Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.963193Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.966451Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:36.995288Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.996095Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.999101Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T04:54:37.028269Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.029066Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.032503Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T04:54:37.093735Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.094406Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.097609Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T04:54:37.158662Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.159477Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.162472Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:37.223934Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.224031Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.224754Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.225305Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.228502Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:37.256328Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:37.257852Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.258565Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.261675Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:37.290780Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.291471Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.294652Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T04:54:37.323958Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.324661Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.327785Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:37.388928Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.390209Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.390773Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.393044Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.395049Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T04:54:37.395612Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T04:54:37.425205Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.426028Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.428711Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T04:54:37.458103Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.458769Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.461782Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T04:54:37.673882Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.674583Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.677423Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T04:54:37.738920Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.739609Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.742304Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T04:54:37.804239Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.804898Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.807733Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:37.869054Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.869799Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.874081Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:37.934222Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.934840Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.937602Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:37.950612Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.951160Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.954173Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T04:54:37.983449Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.983531Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.983999Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.984250Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.987105Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T04:54:38.017893Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T04:54:38.048771Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.048861Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.049384Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.052044Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T04:54:38.364516Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.364612Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.365145Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.365425Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.368205Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T04:54:38.369162Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T04:54:38.429689Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.429807Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.445762Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.445844Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.446255Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.446573Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.449376Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T04:54:38.450806Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:38.511784Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.511887Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.543793Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.544241Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.546900Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T04:54:38.608404Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.723097Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.723563Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.725718Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T04:54:38.755412Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.821581Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.821989Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.824196Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T04:54:39.853888Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.854145Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.854266Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.854576Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.854777Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.858325Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:39.859501Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:39.860453Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:39.887119Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.887186Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.887213Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.887393Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.887629Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.890083Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:39.890759Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:39.919995Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.920061Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.920227Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.922175Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:39.952017Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.920220Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:50.186514Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:50.186514Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] 
[2026-05-27T04:54:50.186514Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:50.186573Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] 
[2026-05-27T04:54:50.186584Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:50.186591Z] [nf-c6634c2e0be150f893214e53bf87b25c-ddd49-rt76z] [660_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec