File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/3630fee11dee0e7e8518d3c8a59ad8/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/f9366e75d4447864b0d49d6c14d5f7/HCC1395_tumor.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/3630fee11dee0e7e8518d3c8a59ad8/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/f9366e75d4447864b0d49d6c14d5f7/HCC1395_tumor.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/88/3630fee11dee0e7e8518d3c8a59ad8/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T04:54:31.305872Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:31.306377Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:31.306390Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:31.306396Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:31.306400Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAUNWAu'
[2026-05-27T04:54:31.306404Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:31.306409Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:31.306413Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:31.306416Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:31.306420Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:31.306424Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:31.306428Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:31.306433Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:31.306436Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:31.306989Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:31.307089Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:31.313528Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:31.314304Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:31.314543Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:31.314808Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:31.315115Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315774Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315867Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315940Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316062Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316164Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316366Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316752Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316883Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317179Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317728Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318339Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318489Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320235Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320510Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:31.320888Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321063Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321131Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321246Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321312Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321519Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321588Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321706Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321777Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.322096Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.322336Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.322814Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.322890Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.323002Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.323068Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.323178Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.323246Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.323388Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.323500Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.323768Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324087Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324202Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324266Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324377Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324445Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324553Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324616Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324748Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324840Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.324951Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325013Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325167Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325623Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325799Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325867Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.325981Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.326045Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.326152Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.326213Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.326324Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.326386Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.326496Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.326562Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.326689Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.326900Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.327587Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.327687Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.327816Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.327888Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342649Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342782Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342856Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343031Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343104Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343192Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343260Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343374Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343448Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343497Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:31.345417Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.346367Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.348604Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.349209Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.350242Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.351087Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.353630Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T04:54:31.355559Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.355954Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T04:54:31.356653Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.357237Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.365322Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T04:54:31.366050Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T04:54:31.366535Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T04:54:31.369499Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T04:54:31.370838Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T04:54:31.371998Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T04:54:31.472703Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.473582Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.477552Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.478383Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T04:54:31.478765Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.482868Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T04:54:31.594119Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.595339Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.599054Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T04:54:31.860748Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.861936Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.865978Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T04:54:32.227747Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.228760Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.232469Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T04:54:32.344035Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.345246Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.349679Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T04:54:32.962342Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.962490Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.963440Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.964080Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.967539Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T04:54:32.968580Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T04:54:33.031175Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.031279Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.032010Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.032338Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.036504Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T04:54:33.147903Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.148997Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.152167Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T04:54:33.213485Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.214412Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.217911Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T04:54:33.279132Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.280504Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.283947Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T04:54:33.345494Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.345636Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.346352Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.346843Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.350481Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T04:54:33.612361Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.613174Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.616977Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T04:54:33.678252Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.678382Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.679211Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.679614Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.683164Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T04:54:33.716875Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T04:54:33.744730Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.744818Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.745643Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.745957Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.749963Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T04:54:33.751075Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T04:54:33.974777Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T04:54:34.011374Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.012442Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.015897Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T04:54:34.076977Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.078008Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.081845Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T04:54:34.193172Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.193944Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.197144Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T04:54:34.258339Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.259158Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.262336Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T04:54:34.323594Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.324436Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.327642Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T04:54:34.439343Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.440172Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.443237Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T04:54:34.755356Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.756080Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.759150Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T04:54:34.820635Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.821468Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.824778Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T04:54:34.885931Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.886689Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.890252Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T04:54:35.152315Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.153256Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.156613Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T04:54:35.217646Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.217746Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.218399Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.218696Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.222281Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T04:54:35.263843Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T04:54:35.283463Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.283650Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.284359Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.284893Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.289090Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T04:54:35.289962Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T04:54:35.349339Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.350155Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.353545Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T04:54:35.414486Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.415230Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.418740Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T04:54:35.504848Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T04:54:35.530833Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.530931Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.530970Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.531009Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.531862Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.532512Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.532899Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.533395Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.538152Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T04:54:35.538547Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T04:54:35.543555Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T04:54:35.544771Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T04:54:35.599663Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.599765Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.600600Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.600922Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.601463Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.604758Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T04:54:35.606785Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.607347Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T04:54:35.607556Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.608657Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.610788Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T04:54:35.612964Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T04:54:35.642494Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.642616Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.642650Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.643208Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.643479Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.645817Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.646388Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T04:54:35.649730Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T04:54:35.650609Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T04:54:35.654249Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.654860Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.657725Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T04:54:35.687205Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.687311Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.687888Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.688391Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.691332Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.692849Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T04:54:35.693657Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T04:54:35.693984Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.694308Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.697272Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T04:54:35.702344Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.702769Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.705940Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T04:54:35.735056Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.735156Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.735927Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.767973Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.033045Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.033607Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.036824Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T04:54:36.098594Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.513978Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.514524Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.517342Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T04:54:36.580193Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.096236Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.096768Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.099750Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T04:54:37.161120Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.161439Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.161646Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.162053Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.162740Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.165744Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:37.168245Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:37.169094Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:37.195761Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.195850Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.195875Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.196147Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.196419Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.199644Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:37.200265Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:37.228751Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.228842Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.229092Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.232158Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:37.261315Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.886191Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:50.194780Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:50.194780Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] 
[2026-05-27T04:54:50.194780Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:50.194844Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] 
[2026-05-27T04:54:50.194852Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:50.194858Z] [nf-883630fee11dee0e7e8518d3c8a59ad8-53dd4-gm8nh] [620_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec