Clear
Retried
succeeded NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (rna_s1200_S21) 8s 1s 0s 6s 3.8 MB 99% 1.4 GB 1.4 GB 12.0 KB 1.0 GB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:TRIM_WORKFLOW:FASTP (rna_s1200_S21) 30s 2s 22s 6s 2.7 GB 856% 1.4 GB 1.2 GB 0 bytes 1.2 GB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQC (rna_s1200_S21) 1m 9s 8s 56s 5s 564.4 MB 197% 1.4 GB 3.5 MB 0 bytes 3.8 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_QUANT (rna_s1200_S21) 1m 36s 2s 1m 27s 7s 1.4 GB 299% 1.6 GB 12.0 MB 1.6 GB 12.0 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:TRIM_WORKFLOW:FASTQC_FOR_FASTP (rna_s1200_S21) 1m 4s 6s 53s 5s 502.2 MB 198% 1.3 GB 3.5 MB 0 bytes 3.8 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_TX2GENE_QC (rna_s1200_S21) 7s 5s 1s 1s 15.8 MB 1368% 44.3 MB 1.3 MB 0 bytes 1.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (rna_s1200_S21) 5s 3s 0s 1s 20.7 MB 4305% 4.6 MB 3.4 KB 0 bytes 8.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:PRESEQ_LCEXTRAP (rna_s1200_S21) 1m 21s 2s 1m 15s 4s 205.4 MB 100% 853.7 MB 452.8 KB 0 bytes 460.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQ_ALIGN_STAR:STAR_ALIGNMENT (rna_s1200_S21) 4m 20s 2s 2m 57s 1m 21s 35.6 GB 972% 45.3 GB 9.0 GB 6.5 GB 8.9 GB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS (rna_s1200_S21) 24s 1s 18s 5s 542.6 MB 223% 886.6 MB 975.4 KB 0 bytes 984.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA (rna_s1200_S21) 55s 2s 39s 14s 4.4 GB 100% 5.0 GB 44.6 MB 0 bytes 44.6 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQ_ALIGN_STAR:SAMTOOLS_INDEX_STAR_ALIGNMENT (rna_s1200_S21) 12s 2s 6s 4s 23.9 MB 165% 853.7 MB 2.4 MB 0 bytes 2.4 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (rna_s1200_S21) 2m 50s 1s 1m 31s 1m 17s 2.9 GB 289% 4.9 GB 446.4 MB 662.0 MB 446.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (rna_s1200_S21) 2m 12s 16s 1m 33s 23s 36.2 GB 163% 1.8 GB 981.1 MB 0 bytes 981.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (rna_s1200_S21) 47s 2s 29s 16s 787.8 MB 212% 9.6 GB 261.4 MB 7.8 GB 261.4 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT (rna_s1200_S21) 49s 9s 36s 4s 47.2 MB 171% 872.9 MB 1.3 KB 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS (rna_s1200_S21) 3s 2s 0s 0s 0 bytes 94% 74.8 KB 947 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INFEREXPERIMENT (rna_s1200_S21) 14s 8s 2s 4s 72.6 MB 1817% 55.7 MB 826 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (rna_s1200_S21) 48s 9s 35s 4s 129.5 MB 202% 919.7 MB 52.5 MB 0 bytes 52.5 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INNERDISTANCE (rna_s1200_S21) 40s 8s 28s 4s 915.1 MB 232% 176.9 MB 69.3 MB 0 bytes 69.5 MB 1
38 items found |
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