Clear
Retried
succeeded NFCORE_RNAFUSION:DEMUX_FROM_RUNDIR:DEMULTIPLEX:CAT_FASTQ (rna_s1200_S21) 10s 2s 1s 6s 3.9 MB 32% 1.4 GB 1.4 GB 12.0 KB 1.0 GB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_TX2GENE_QC (rna_s1200_S21) 4s 1s 2s 1s 223.2 MB 1207% 44.3 MB 1.3 MB 3.2 MB 1.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQC (rna_s1200_S21) 1m 0s 1s 55s 4s 528.0 MB 194% 1.4 GB 3.5 MB 0 bytes 3.8 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:TRIM_WORKFLOW:FASTP (rna_s1200_S21) 30s 1s 23s 6s 2.7 GB 872% 1.4 GB 1.2 GB 0 bytes 1.2 GB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:TRIM_WORKFLOW:FASTQC_FOR_FASTP (rna_s1200_S21) 1m 16s 19s 53s 4s 500.3 MB 197% 1.3 GB 3.5 MB 0 bytes 3.8 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:KALLISTO_QUANT (rna_s1200_S21) 1m 37s 1s 1m 27s 9s 1.4 GB 290% 1.6 GB 12.0 MB 1.5 GB 12.0 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:FASTQ_ALIGN_STAR:STAR_ALIGNMENT (rna_s1200_S21) 4m 37s 2s 3m 9s 1m 26s 35.5 GB 987% 45.3 GB 9.0 GB 8.4 GB 8.9 GB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:PRESEQ_LCEXTRAP (rna_s1200_S21) 1m 22s 2s 1m 16s 4s 202.7 MB 100% 853.7 MB 452.8 KB 0 bytes 460.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:PICARD_COLLECTINSERTSIZEMETRICS (rna_s1200_S21) 23s 1s 18s 4s 515.8 MB 212% 886.6 MB 975.3 KB 0 bytes 984.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:ARRIBA_WORKFLOW:ARRIBA (rna_s1200_S21) 1m 6s 1s 52s 13s 4.4 GB 100% 5.0 GB 44.6 MB 0 bytes 44.6 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (rna_s1200_S21) 2m 51s 2s 1m 31s 1m 17s 3.0 GB 271% 4.9 GB 446.4 MB 642.4 MB 446.2 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:GATK4_MARKDUPLICATES (rna_s1200_S21) 2m 26s 15s 1m 56s 15s 46.6 GB 166% 1.8 GB 981.1 MB 0 bytes 981.4 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:CONTAMINATION_SKIPPED_LOW_READS (rna_s1200_S21) 3s 1s 0s 1s 0 bytes 84% 75.3 KB 950 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INFEREXPERIMENT (rna_s1200_S21) 7s 1s 1s 5s 72.8 MB 1760% 55.8 MB 833 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_BAMSTAT (rna_s1200_S21) 43s 1s 36s 6s 47.3 MB 170% 872.9 MB 1.3 KB 0 bytes 12.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONSATURATION (rna_s1200_S21) 51s 1s 46s 4s 1.1 GB 180% 906.5 MB 28.0 KB 0 bytes 40.0 KB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (rna_s1200_S21) 41s 1s 36s 4s 128.9 MB 200% 919.7 MB 52.5 MB 0 bytes 52.5 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_INNERDISTANCE (rna_s1200_S21) 37s 1s 29s 7s 914.2 MB 226% 176.9 MB 69.3 MB 0 bytes 69.3 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:SAMTOOLS_VIEW_ALIGNMENT_CRAM (rna_s1200_S21) 45s 1s 30s 14s 775.2 MB 210% 9.6 GB 261.4 MB 7.4 GB 261.4 MB 1
succeeded NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_READDISTRIBUTION (rna_s1200_S21) 1m 17s 1s 1m 11s 5s 1.1 GB 136% 1.1 GB 1.7 KB 0 bytes 12.0 KB 1
38 items found |
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