Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_SOMATIC:BCFTOOLS_NORM (HCC1395_BL) 20s 3s 7s 9s 33.8 MB 270% 3.0 GB 212.4 KB 0 bytes 224.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_BL) 6s 3s - - 10.7 MB 96% 68.3 MB 7.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (HCC1395_BL) 38s 3s 22s 12s 331.9 MB 492% 4.1 GB 288.8 MB 0 bytes 336.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (HCC1395_BL) 29s 4s 15s 10s 608.9 MB 123% 6.0 GB 265.9 KB 0 bytes 268.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (HCC1395_BL) 40s 4s 27s 9s 1.9 GB 104% 3.1 GB 6.3 MB 43.4 MB 6.3 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (HCC1395_BL) 21s 2s 9s 10s 537.1 MB 187% 3.2 GB 99.0 MB 0 bytes 99.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (HCC1395_BL) 50s 12s 27s 11s 3.2 GB 197% 3.2 GB 902.6 KB 2.7 GB 936.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 59s 13s 36s 10s 459.7 MB 135% 160.3 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 45s 12s 22s 11s 473.2 MB 148% 159.5 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (HCC1395_BL) 1m 47s 1m 14s 22s 10s 739.9 MB 167% 1.2 GB 8.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (HCC1395_BL) 20s 16s 2s 2s 220.0 MB 344% 95.5 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_BL) 19s 3s 6s 10s 128.4 MB 139% 147.6 MB 68.2 MB 0 bytes 68.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 20s 2s 9s 9s 101.0 MB 110% 3.1 GB 283.5 KB 0 bytes 288.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (HCC1395_BL) 4s 2s 1s 1s 15.0 MB 105% 68.7 MB 108.2 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 22s 3s 8s 11s 385.5 MB 107% 3.1 GB 3.6 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 56s 40s 6s 9s 995.8 MB 254% 207.2 MB 1.3 MB 0 bytes 1.3 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (HCC1395_BL) 21s 4s 4s 13s 100.1 MB 218% 219.9 MB 106.4 MB 0 bytes 106.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (HCC1395_BL) 1m 35s 58s 28s 9s 3.9 GB 151% 4.3 GB 107.9 MB 0 bytes 107.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (HCC1395_BL) 48s 5s 34s 9s 275.3 MB 141% 3.2 GB 3.2 MB 0 bytes 2.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CONVERT_NORMAL_TO_BAM (HCC1395_BL) 17s 3s 4s 10s 94.4 MB 219% 219.9 MB 106.4 MB 0 bytes 106.4 MB 1
55 items found |
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