|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:ANNOTATE_VCF_READCOUNTS (HCC1395_BL)
|
9s |
7s |
0s |
1s |
12.6 MB |
99% |
3.2 MB |
52.4 KB |
0 bytes |
60.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:ANNOTATE_VCF_READCOUNTS (Sig_18_Blood)
|
9s |
7s |
0s |
1s |
13.0 MB |
99% |
3.2 MB |
51.4 KB |
0 bytes |
60.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BAMREADCOUNT_BLOOD (HCC1395_BL)
|
23s |
5s |
9s |
9s |
74.7 MB |
100% |
3.2 GB |
187.0 KB |
0 bytes |
196.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BAMREADCOUNT_BLOOD (Sig_18_Blood)
|
24s |
6s |
9s |
9s |
70.8 MB |
100% |
3.1 GB |
187.6 KB |
0 bytes |
196.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BAMREADCOUNT_TUMOR (HCC1395_BL)
|
23s |
5s |
9s |
9s |
71.9 MB |
100% |
3.2 GB |
187.8 KB |
0 bytes |
196.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BAMREADCOUNT_TUMOR (Sig_18_Blood)
|
24s |
6s |
10s |
8s |
73.7 MB |
100% |
3.1 GB |
188.9 KB |
0 bytes |
196.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BCFTOOLS_QUERY (HCC1395_BL)
|
5s |
4s |
0s |
0s |
26.5 MB |
6705% |
171.7 KB |
2.5 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BCFTOOLS_QUERY (Sig_18_Blood)
|
8s |
7s |
0s |
0s |
32.4 MB |
5608% |
173.0 KB |
2.4 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (HCC1395_tumor_vs_HCC1395_BL)
|
11s |
2s |
6s |
2s |
85.7 MB |
533% |
26.9 MB |
670 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (Sig_18_tissue_vs_Sig_18_Blood)
|
21s |
3s |
16s |
1s |
86.9 MB |
273% |
29.3 MB |
670 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL)
|
56s |
40s |
6s |
9s |
995.8 MB |
254% |
207.2 MB |
1.3 MB |
0 bytes |
1.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_tumor)
|
1m 0s |
43s |
7s |
9s |
838.1 MB |
241% |
262.1 MB |
2.1 MB |
0 bytes |
2.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_Blood)
|
59s |
41s |
6s |
11s |
807.8 MB |
257% |
215.3 MB |
1.5 MB |
0 bytes |
1.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue)
|
20s |
2s |
8s |
9s |
999.9 MB |
221% |
310.3 MB |
4.4 MB |
0 bytes |
4.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL)
|
45s |
12s |
22s |
11s |
473.2 MB |
148% |
159.5 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL)
|
59s |
13s |
36s |
10s |
459.7 MB |
135% |
160.3 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_tumor)
|
58s |
18s |
30s |
10s |
577.9 MB |
131% |
306.9 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_tumor)
|
1m 14s |
18s |
46s |
10s |
597.8 MB |
122% |
307.7 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_Blood)
|
1m 1s |
13s |
37s |
11s |
510.2 MB |
130% |
185.8 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_Blood)
|
36s |
3s |
23s |
10s |
617.7 MB |
142% |
184.9 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |