Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (HCC1395_BL) 38s 2s 23s 12s 283.9 MB 505% 4.0 GB 288.8 MB 0 bytes 336.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (HCC1395_BL) 27s 4s 14s 9s 608.1 MB 119% 6.0 GB 265.9 KB 0 bytes 268.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (HCC1395_BL) 45s 4s 31s 10s 1.9 GB 104% 3.1 GB 6.3 MB 43.4 MB 6.3 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (HCC1395_BL) 24s 4s 9s 11s 538.7 MB 184% 3.1 GB 99.0 MB 0 bytes 99.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (HCC1395_BL) 1m 1s 18s 31s 12s 3.1 GB 132% 3.2 GB 902.6 KB 2.7 GB 940.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 53s 18s 23s 12s 499.7 MB 148% 159.5 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 1m 6s 18s 35s 13s 578.4 MB 141% 160.3 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (HCC1395_BL) 1m 3s 33s 21s 8s 740.1 MB 733% 1.2 GB 8.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (HCC1395_BL) 26s 21s 4s 1s 312.3 MB 322% 95.5 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_BL) 19s 4s 5s 10s 128.4 MB 139% 147.6 MB 68.2 MB 0 bytes 68.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_BL) 4s 2s - - 10.6 MB 114% 68.3 MB 7.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 22s 4s 10s 8s 104.3 MB 110% 3.1 GB 283.5 KB 0 bytes 288.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 22s 4s 9s 9s 236.9 MB 107% 3.1 GB 3.6 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (HCC1395_BL) 18s 4s 4s 10s 100.4 MB 218% 219.9 MB 106.4 MB 0 bytes 106.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 56s 41s 6s 8s 909.9 MB 293% 207.2 MB 1.3 MB 0 bytes 1.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (HCC1395_BL) 53s 16s 28s 9s 3.9 GB 210% 4.3 GB 107.9 MB 0 bytes 107.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (HCC1395_BL) 51s 7s 35s 9s 89.2 MB 153% 3.2 GB 3.2 MB 0 bytes 2.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (HCC1395_BL) 4s 2s - - 14.9 MB 107% 68.7 MB 108.2 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA (HCC1395_BL) 21s 15s 4s 2s 276.8 MB 266% 95.8 MB 728.3 KB 0 bytes 736.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA_GENOME (HCC1395_BL) 22s 16s 4s 2s 292.4 MB 321% 96.1 MB 1.0 MB 0 bytes 1.0 MB 1
55 items found |
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