succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 5s 3s 1s 1s 10.8 MB 101% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 14s 3s 2s 9s 11.0 MB 100% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 6s 3s - - 10.9 MB 98% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 15s 4s 3s 8s 10.9 MB 83% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed) 6s 4s - - 2.9 MB 93% 95.9 KB 49.9 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21;null) 6s 5s - - 3.2 MB 149% 168.1 KB 21.4 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_44120631-44120778;null) 3s 2s - - 3.3 MB 100% 116.4 KB 7.2 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_5117103-5117231;null) 4s 3s - - 3.3 MB 178% 148.9 KB 17.4 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 26s 18s 8s 0s 169.6 MB 192% 112.6 MB 84.6 KB 0 bytes 96.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 43s 16s 18s 9s 179.2 MB 106% 3.2 GB 494.0 KB 0 bytes 508.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 5s 4s 0s 0s 0 bytes 117% 72.6 KB 1.3 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 22s 20s 0s 1s 14.8 MB 98% 5.3 MB 8.3 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_POSTDEDUP_QC (postdedup_qc_aggregation) 23s 19s 0s 3s 13.7 MB 103% 3.0 MB 18.0 KB 0 bytes 24.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 21s 18s 0s 2s 15.3 MB 108% 2.6 MB 7.5 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_BL) 4s 2s - - 10.6 MB 114% 68.3 MB 7.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_tumor) 5s 2s - - 10.4 MB 98% 170.3 MB 10.9 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_Blood) 6s 4s - - 10.7 MB 98% 84.5 MB 7.7 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_tissue) 5s 3s 1s 1s 10.4 MB 96% 327.2 MB 19.7 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_BL) 19s 4s 5s 10s 128.4 MB 139% 147.6 MB 68.2 MB 0 bytes 68.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_tumor) 24s 3s 12s 9s 132.2 MB 149% 333.9 MB 170.2 MB 0 bytes 170.2 MB 1
626 items found |
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