Clear
Retried
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (HCC1395_BL) 16s 3s 3s 10s 96.1 MB 215% 220.1 MB 106.6 MB 0 bytes 106.6 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 23s 3s 9s 11s 102.2 MB 110% 3.1 GB 283.5 KB 0 bytes 288.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 22s 4s 9s 9s 385.7 MB 107% 3.1 GB 3.6 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (HCC1395_BL) 57s 20s 28s 9s 3.9 GB 152% 4.3 GB 108.2 MB 0 bytes 108.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 54s 39s 5s 9s 845.8 MB 258% 207.2 MB 1.3 MB 0 bytes 1.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (HCC1395_BL) 47s 4s 34s 9s 90.6 MB 137% 3.2 GB 3.2 MB 0 bytes 2.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA_GENOME (HCC1395_BL) 10s 5s 3s 2s 218.0 MB 326% 96.1 MB 1.0 MB 0 bytes 1.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GATHERPILEUPSUMMARIES (HCC1395_BL) 7s 4s 3s 0s 257.3 MB 263% 95.6 MB 710.6 KB 0 bytes 712.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA (HCC1395_BL) 8s 4s 3s 1s 221.1 MB 298% 95.8 MB 728.3 KB 0 bytes 736.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (HCC1395_BL) 36s 3s 21s 11s 318.8 MB 480% 4.1 GB 288.8 MB 0 bytes 336.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (HCC1395_BL) 27s 4s 14s 9s 611.9 MB 117% 6.0 GB 265.9 KB 0 bytes 268.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (HCC1395_BL) 24s 5s 8s 11s 536.4 MB 185% 3.1 GB 99.0 MB 0 bytes 99.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (HCC1395_BL) 42s 4s 27s 11s 1.9 GB 104% 3.1 GB 6.3 MB 43.4 MB 6.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (HCC1395_BL) 53s 17s 27s 9s 3.2 GB 387% 3.2 GB 902.6 KB 2.6 GB 936.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 58s 16s 31s 11s 471.3 MB 131% 160.5 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 48s 16s 22s 10s 500.9 MB 140% 159.5 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (HCC1395_BL) 1m 54s 1m 20s 21s 12s 740.0 MB 167% 1.2 GB 8.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (HCC1395_BL) 22s 18s 2s 2s 241.1 MB 352% 95.6 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_BL) 18s 3s 5s 10s 127.9 MB 140% 147.6 MB 68.2 MB 0 bytes 68.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_BL) 4s 2s - - 10.6 MB 86% 68.3 MB 7.1 KB 0 bytes 8.0 KB 1
55 items found |
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