Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (Sig_18_tissue) 1m 19s 3s 1m 1s 14s 841.8 MB 466% 7.8 GB 1.7 GB 0 bytes 1.7 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (Sig_18_tissue) 44s 3s 32s 9s 679.7 MB 145% 6.3 GB 267.5 KB 0 bytes 272.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (Sig_18_tissue) 44s 4s 31s 9s 1.9 GB 119% 3.3 GB 14.8 MB 289.3 MB 14.8 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (Sig_18_tissue) 52s 4s 36s 12s 680.8 MB 212% 3.8 GB 566.5 MB 9.4 MB 567.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (Sig_18_tissue) 1m 31s 3s 1m 17s 11s 3.2 GB 200% 3.6 GB 896.9 KB 3.3 GB 928.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 57s 13s 1m 31s 13s 591.6 MB 110% 631.5 MB 3.4 MB 3.4 MB 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 14s 13s 49s 12s 610.1 MB 117% 630.7 MB 3.3 MB 16.0 MB 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (Sig_18_tissue) 2m 36s 1m 9s 1m 17s 9s 740.9 MB 122% 5.1 GB 9.6 MB 0 bytes 2.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (Sig_18_tissue) 18s 15s 3s 0s 215.3 MB 331% 95.5 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (Sig_18_tissue) 40s 3s 27s 10s 131.0 MB 157% 756.0 MB 327.0 MB 0 bytes 327.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_tissue) 5s 2s - - 10.4 MB 83% 327.2 MB 19.7 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (Sig_18_tissue) 8s 2s 1s 5s 15.0 MB 99% 327.6 MB 108.2 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (Sig_18_tissue) 33s 2s 20s 11s 104.8 MB 216% 905.4 MB 533.0 MB 0 bytes 533.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 23s 3s 11s 9s 264.1 MB 135% 3.3 GB 6.4 MB 0 bytes 6.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 19s 2s 7s 9s 1.0 GB 228% 310.4 MB 4.4 MB 0 bytes 4.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue) 32s 2s 21s 9s 102.3 MB 123% 3.4 GB 290.7 KB 0 bytes 296.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CONVERT_TUMOR_TO_BAM (Sig_18_tissue) 34s 3s 20s 11s 115.3 MB 217% 905.4 MB 533.0 MB 0 bytes 533.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_TUMOR (Sig_18_tissue) 6s 2s 3s 1s 251.0 MB 278% 95.6 MB 711.3 KB 0 bytes 716.0 KB 1
18 items found