Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (Sig_18_tissue) 1m 29s 2s 1m 12s 14s 869.8 MB 418% 7.8 GB 1.7 GB 0 bytes 1.7 GB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (Sig_18_tissue) 51s 2s 38s 11s 615.0 MB 208% 3.9 GB 566.5 MB 0 bytes 567.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (Sig_18_tissue) 46s 4s 31s 11s 1.9 GB 121% 3.3 GB 14.8 MB 289.5 MB 14.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (Sig_18_tissue) 44s 3s 33s 8s 679.7 MB 147% 6.3 GB 267.5 KB 0 bytes 272.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (Sig_18_tissue) 1m 41s 12s 1m 19s 10s 2.5 GB 127% 3.6 GB 896.9 KB 3.3 GB 932.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 58s 13s 1m 32s 13s 398.9 MB 110% 631.5 MB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 16s 13s 50s 13s 390.0 MB 118% 630.7 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (Sig_18_tissue) 1m 57s 28s 1m 17s 11s 740.6 MB 166% 5.1 GB 9.6 MB 0 bytes 2.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (Sig_18_tissue) 7s 2s 3s 2s 208.9 MB 322% 95.5 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (Sig_18_tissue) 41s 4s 27s 10s 132.0 MB 158% 756.1 MB 327.0 MB 0 bytes 327.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_tissue) 5s 2s - - 10.3 MB 102% 327.2 MB 19.7 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (Sig_18_tissue) 6s 2s 2s 2s 15.3 MB 101% 327.6 MB 108.2 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue) 32s 2s 21s 9s 102.4 MB 125% 3.4 GB 290.7 KB 0 bytes 296.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 24s 4s 11s 9s 263.2 MB 138% 3.3 GB 6.4 MB 0 bytes 6.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 21s 2s 8s 10s 734.6 MB 222% 310.3 MB 4.4 MB 0 bytes 4.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (Sig_18_tissue) 36s 2s 21s 13s 101.9 MB 220% 905.4 MB 533.0 MB 0 bytes 533.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CONVERT_TUMOR_TO_BAM (Sig_18_tissue) 35s 2s 21s 12s 105.5 MB 222% 905.4 MB 533.0 MB 0 bytes 533.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_TUMOR (Sig_18_tissue) 8s 3s 3s 2s 347.4 MB 286% 95.6 MB 711.3 KB 0 bytes 716.0 KB 1
18 items found