Clear
Retried
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 22s 3s 10s 9s 102.3 MB 113% 3.1 GB 283.5 KB 0 bytes 288.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (HCC1395_BL) 38s 4s 22s 11s 360.3 MB 474% 4.1 GB 288.8 MB 0 bytes 336.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (HCC1395_BL) 28s 3s 14s 11s 612.6 MB 122% 6.0 GB 265.9 KB 0 bytes 268.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (HCC1395_BL) 40s 4s 28s 8s 2.8 GB 104% 3.1 GB 6.3 MB 0 bytes 6.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (HCC1395_BL) 56s 15s 30s 11s 3.3 GB 133% 3.2 GB 902.6 KB 2.7 GB 936.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (HCC1395_BL) 23s 3s 8s 12s 538.3 MB 187% 3.1 GB 99.0 MB 0 bytes 99.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 58s 15s 32s 11s 461.7 MB 136% 160.3 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 51s 15s 24s 12s 463.1 MB 152% 159.5 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (HCC1395_BL) 1m 7s 32s 25s 9s 739.5 MB 382% 1.2 GB 8.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (HCC1395_BL) 8s 3s 3s 2s 227.3 MB 322% 95.5 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_BL) 18s 4s 5s 9s 128.1 MB 138% 147.6 MB 68.2 MB 0 bytes 68.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_BL) 4s 2s - - 10.7 MB 98% 68.3 MB 7.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (HCC1395_BL) 18s 2s 4s 12s 96.2 MB 216% 220.1 MB 106.6 MB 0 bytes 106.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 53s 37s 6s 9s 744.9 MB 242% 207.2 MB 1.3 MB 0 bytes 1.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (HCC1395_BL) 40s 2s 29s 9s 2.0 GB 167% 4.3 GB 108.2 MB 0 bytes 108.0 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 21s 3s 9s 9s 385.3 MB 107% 3.1 GB 3.6 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (HCC1395_BL) 49s 5s 34s 10s 88.7 MB 150% 3.2 GB 3.2 MB 0 bytes 2.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (HCC1395_BL) 5s 3s 1s 1s 14.9 MB 103% 68.7 MB 108.2 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA (HCC1395_BL) 7s 2s 3s 2s 201.7 MB 294% 95.8 MB 728.3 KB 0 bytes 736.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_STRELKA:MERGE_STRELKA_GENOME (HCC1395_BL) 7s 2s 3s 2s 216.3 MB 327% 96.1 MB 1.0 MB 0 bytes 1.0 MB 1
55 items found |
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