Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (Sig_18_tissue) 1m 54s 26s 1m 18s 9s 740.9 MB 116% 5.1 GB 9.6 MB 0 bytes 2.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (Sig_18_tissue) 1m 24s 3s 1m 6s 14s 799.6 MB 441% 7.8 GB 1.7 GB 0 bytes 1.7 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (Sig_18_tissue) 47s 3s 33s 11s 680.6 MB 146% 6.3 GB 267.5 KB 4.0 KB 272.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (Sig_18_tissue) 1m 44s 13s 1m 20s 11s 2.5 GB 113% 3.6 GB 896.9 KB 3.3 GB 928.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (Sig_18_tissue) 43s 3s 31s 9s 2.8 GB 120% 3.3 GB 14.8 MB 0 bytes 14.8 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (Sig_18_tissue) 52s 3s 37s 12s 615.0 MB 213% 3.8 GB 566.5 MB 4.0 KB 567.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 1s 2s 48s 11s 341.8 MB 117% 630.7 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 48s 2s 1m 36s 10s 370.2 MB 110% 631.5 MB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (Sig_18_tissue) 7s 2s 3s 2s 213.8 MB 336% 95.5 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (Sig_18_tissue) 39s 2s 27s 10s 131.7 MB 152% 756.0 MB 327.0 MB 0 bytes 327.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_tissue) 6s 3s - - 10.2 MB 99% 327.2 MB 19.7 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (Sig_18_tissue) 7s 2s 1s 4s 15.3 MB 101% 327.6 MB 108.2 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 23s 2s 8s 12s 675.8 MB 201% 310.3 MB 4.4 MB 0 bytes 4.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue) 31s 2s 22s 7s 103.3 MB 124% 3.4 GB 290.7 KB 0 bytes 296.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 25s 4s 12s 9s 263.2 MB 137% 3.3 GB 6.4 MB 0 bytes 6.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (Sig_18_tissue) 38s 3s 22s 13s 105.1 MB 224% 905.4 MB 533.0 MB 0 bytes 533.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CONVERT_TUMOR_TO_BAM (Sig_18_tissue) 34s 2s 21s 11s 97.5 MB 218% 905.4 MB 533.0 MB 0 bytes 533.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_TUMOR (Sig_18_tissue) 7s 3s 3s 1s 206.1 MB 268% 95.6 MB 711.3 KB 0 bytes 716.0 KB 1
18 items found