Run's output directory was deleted on 2026-06-02 12:20 PM by @abshah.
| Path | ||
|---|---|---|
| /reports/raw_qc/vcftools/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.somatic_sv.FILTER.summary | Mar 09, 2026 9:49 AM | |
| /reports/raw_qc/vcftools/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.somatic_sv.TsTv.count | Mar 09, 2026 9:49 AM | |
| /reports/raw_qc/vcftools/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.somatic_sv.TsTv.qual | Mar 09, 2026 9:49 AM | |
| /reports/raw_qc/vcftools/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.diploid_sv.TsTv.count | Mar 09, 2026 9:48 AM | |
| /reports/raw_qc/vcftools/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.diploid_sv.FILTER.summary | Mar 09, 2026 9:48 AM | |
| /variant_calling/chip_variants/869_ELU-N1-BDNA-1_B23H3TCLT3_1/somatic_normal/869_ELU-N1-BDNA-1_B23H3TCLT3_1.mutect2_tumor_only.filtered.vcf.gz | Mar 09, 2026 9:48 AM | |
| /reports/raw_qc/vcftools/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.diploid_sv.TsTv.qual | Mar 09, 2026 9:48 AM | |
| /variant_calling/chip_variants/869_ELU-N1-BDNA-1_B23H3TCLT3_1/somatic_normal/869_ELU-N1-BDNA-1_B23H3TCLT3_1.mutect2_tumor_only.filtered.vcf.gz.tbi | Mar 09, 2026 9:48 AM | |
| /variant_calling/chip_variants/869_ELU-N1-BDNA-1_B23H3TCLT3_1/somatic_normal/869_ELU-N1-BDNA-1_B23H3TCLT3_1.mutect2_tumor_only.filtered.vcf.gz.filteringStats.tsv | Mar 09, 2026 9:48 AM | |
| /reports/raw_qc/bcftools/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.somatic_sv.bcftools_stats.txt | Mar 09, 2026 9:48 AM | |
| /reports/raw_qc/bcftools/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.diploid_sv.bcftools_stats.txt | Mar 09, 2026 9:48 AM | |
| /variant_calling/chip_variants/869_ELU-N1-BDNA-1_B23H3TCLT3_1/somatic_normal/869_ELU-N1-BDNA-1_B23H3TCLT3_1.mutect2.artifactprior.tar.gz | Mar 09, 2026 9:47 AM | |
| /variant_calling/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.diploid_sv.vcf.gz.tbi | Mar 09, 2026 9:47 AM | |
| /variant_calling/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.diploid_sv.vcf.gz | Mar 09, 2026 9:47 AM | |
| /variant_calling/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.somatic_sv.vcf.gz | Mar 09, 2026 9:47 AM | |
| /variant_calling/manta/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1/869_BIT-T1-TDNA-1_A23MJ3TLT4_1_vs_869_BIT-N1-BDNA-1_B23H3TCLT3_1.manta.somatic_sv.vcf.gz.tbi | Mar 09, 2026 9:47 AM | |
| /variant_calling/chip_variants/869_ELU-N1-BDNA-1_B23H3TCLT3_1/somatic_normal/869_ELU-N1-BDNA-1_B23H3TCLT3_1.mutect2_tumor_only.vcf.gz | Mar 09, 2026 9:46 AM | |
| /variant_calling/chip_variants/869_ELU-N1-BDNA-1_B23H3TCLT3_1/somatic_normal/869_ELU-N1-BDNA-1_B23H3TCLT3_1.mutect2_tumor_only.vcf.gz.tbi | Mar 09, 2026 9:46 AM | |
| /variant_calling/chip_variants/869_ELU-N1-BDNA-1_B23H3TCLT3_1/germline/869_ELU-N1-BDNA-1_B23H3TCLT3_1.haplotypecaller.filtered.vcf.gz | Mar 09, 2026 9:46 AM | |
| /variant_calling/haplotypecaller/869_ELU-N1-BDNA-1_B23H3TCLT3_1/869_ELU-N1-BDNA-1_B23H3TCLT3_1.haplotypecaller.filtered.vcf.gz | Mar 09, 2026 9:46 AM |