succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 19s 17s - - 11.1 MB 100% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 28s 17s 2s 9s 10.8 MB 104% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 19s 17s - - 11.0 MB 103% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 27s 17s 2s 8s 11.1 MB 103% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed) 22s 20s - - 3.0 MB 137% 98.5 KB 49.9 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21;null) 12s 11s - - 3.3 MB 37% 170.0 KB 21.4 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_44120631-44120778;null) 4s 3s - - 3.3 MB 95% 123.7 KB 7.2 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_5117103-5117231;null) 4s 3s - - 3.2 MB 67% 155.7 KB 17.3 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 36s 28s 6s 2s 179.0 MB 432% 112.6 MB 84.6 KB 0 bytes 96.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 30s 3s 18s 9s 178.4 MB 216% 3.2 GB 494.0 KB 0 bytes 508.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 13s 11s 0s 1s 0 bytes 95% 75.8 KB 1.3 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 24s 21s 0s 2s 15.3 MB 102% 5.3 MB 8.3 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_POSTDEDUP_QC (postdedup_qc_aggregation) 20s 16s 0s 3s 15.0 MB 105% 3.0 MB 18.0 KB 0 bytes 24.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 19s 16s 0s 2s 16.7 MB 102% 2.6 MB 7.5 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_BL) 6s 3s - - 10.7 MB 112% 68.3 MB 7.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_tumor) 5s 3s - - 10.6 MB 100% 170.3 MB 10.9 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_Blood) 5s 2s - - 10.4 MB 69% 84.5 MB 7.7 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_tissue) 5s 3s - - 10.3 MB 95% 327.2 MB 19.7 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_BL) 18s 3s 5s 10s 129.8 MB 139% 147.6 MB 68.2 MB 0 bytes 68.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_tumor) 24s 2s 13s 9s 131.0 MB 150% 333.9 MB 170.2 MB 0 bytes 170.2 MB 1
626 items found |
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