Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (Sig_18_tissue) 1m 24s 2s 1m 7s 14s 863.4 MB 427% 7.8 GB 1.7 GB 0 bytes 1.7 GB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (Sig_18_tissue) 53s 2s 36s 15s 614.2 MB 212% 3.9 GB 566.5 MB 4.0 KB 567.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (Sig_18_tissue) 44s 2s 32s 10s 1.9 GB 120% 3.3 GB 14.8 MB 0 bytes 14.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (Sig_18_tissue) 48s 2s 33s 13s 613.2 MB 145% 6.3 GB 267.5 KB 0 bytes 272.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (Sig_18_tissue) 1m 36s 2s 1m 21s 13s 2.5 GB 197% 3.6 GB 896.9 KB 2.2 GB 928.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 48s 3s 1m 34s 11s 579.5 MB 110% 631.5 MB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 1s 2s 49s 10s 614.9 MB 118% 630.7 MB 3.3 MB 4.0 KB 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (Sig_18_tissue) 1m 30s 2s 1m 17s 10s 740.8 MB 278% 5.1 GB 9.6 MB 0 bytes 2.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (Sig_18_tissue) 6s 2s 3s 1s 221.2 MB 332% 95.5 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (Sig_18_tissue) 39s 3s 25s 11s 131.5 MB 155% 756.1 MB 327.0 MB 0 bytes 327.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_tissue) 5s 2s 1s 2s 10.4 MB 88% 327.2 MB 19.7 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 48s 30s 8s 9s 729.1 MB 198% 310.3 MB 4.4 MB 4.0 KB 4.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue) 32s 2s 21s 9s 102.3 MB 123% 3.4 GB 290.7 KB 0 bytes 296.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (Sig_18_tissue) 6s 2s 1s 3s 15.0 MB 100% 327.6 MB 108.2 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (Sig_18_tissue) 34s 3s 20s 11s 97.9 MB 222% 905.4 MB 533.0 MB 0 bytes 533.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 23s 3s 11s 9s 264.1 MB 136% 3.3 GB 6.4 MB 0 bytes 6.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CONVERT_TUMOR_TO_BAM (Sig_18_tissue) 34s 3s 20s 11s 111.7 MB 222% 905.4 MB 533.0 MB 0 bytes 533.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_TUMOR (Sig_18_tissue) 7s 3s 3s 1s 217.3 MB 281% 95.7 MB 711.3 KB 0 bytes 716.0 KB 1
18 items found