Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (HCC1395_BL) 5s 3s 0s 1s 3.6 MB 5907% 1.1 MB 799.7 KB 0 bytes 88.0 KB 1
succeeded NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (HCC1395_BL) 5s 3s 0s 1s 14.0 MB 4032% 11.1 MB 21.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_DECONFLICT_VARIANTS:DECONFLICT_VARIANTS (HCC1395_BL) 5s 3s 0s 1s 14.9 MB 2312% 12.1 MB 139.0 KB 0 bytes 160.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 14s 2s 3s 9s 8.8 MB 133% 155.6 MB 125.8 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 40s 3s 28s 9s 1.9 GB 110% 167.2 MB 6.1 MB 153.8 MB 6.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:GERMLINE_CNV (HCC1395_BL) 28s 2s 17s 8s 488.8 MB 178% 3.2 GB 187.7 KB 0 bytes 196.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (HCC1395_BL) 21s 18s - - 3.2 MB 105% 2.2 MB 108.4 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 31s 18s 3s 9s 476.4 MB 343% 147.5 MB 1.3 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (HCC1395_BL) 41s 6s 3s 31s 397.2 MB 760% 685.4 MB 366.8 KB 0 bytes 8.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (HCC1395_BL) 25s 20s 3s 2s 270.5 MB 364% 95.9 MB 734.6 KB 0 bytes 740.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (HCC1395_BL) 17s 3s 4s 9s 911.9 MB 9345% 10.3 MB 379.5 KB 0 bytes 25.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (HCC1395_BL) 4s 2s 0s 1s 19.7 MB 4408% 8.3 MB 18.1 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (HCC1395_BL) 36s 18s 8s 9s 29.3 MB 206% 3.0 GB 204.6 KB 0 bytes 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (HCC1395_BL) 37s 19s 8s 9s 29.1 MB 222% 3.0 GB 194.9 KB 0 bytes 204.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (HCC1395_BL) 5s 4s - - 19.6 MB 5512% 565.3 KB 455.9 KB 0 bytes 468.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (HCC1395_BL) 4s 3s 0s 0s 3.7 MB 2877% 159.4 KB 1.3 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (HCC1395_BL) 11s 9s 0s 1s 15.2 MB 4210% 31.2 MB 328.5 KB 0 bytes 336.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (HCC1395_BL) 7s 1s 3s 2s 1.7 GB 819% 81.2 MB 53.5 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:GT_CORRECTION (HCC1395_BL) 7s 2s 3s 1s 1.5 GB 329% 68.6 MB 40.3 KB 0 bytes 56.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (HCC1395_BL) 7s 3s 2s 1s 261.4 MB 315% 16.5 MB 50.3 KB 0 bytes 60.0 KB 1
27 items found |
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