succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_Blood) 15s 1s 3s 10s 641.6 MB 312% 157.7 MB 1.5 MB 7.1 MB 1.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 17s 1s 5s 10s 772.0 MB 232% 260.2 MB 4.5 MB 57.9 MB 4.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_BL;SNP_GRCh38_hg38_wChr) 21s 1s 11s 9s 494.1 MB 318% 4.1 GB 832.8 KB 171.5 MB 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (HCC1395_tumor;SNP_GRCh38_hg38_wChr) 24s 1s 12s 11s 495.6 MB 321% 4.5 GB 847.2 KB 369.3 MB 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_Blood;SNP_GRCh38_hg38_wChr) 22s 1s 10s 11s 419.7 MB 423% 3.9 GB 830.3 KB 102.0 MB 212.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (Sig_18_tissue;SNP_GRCh38_hg38_wChr) 35s 3s 22s 10s 490.8 MB 205% 4.8 GB 851.1 KB 58.8 MB 216.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 21s 11s 1s 9s 3.1 MB 3112% 12.1 MB 859.2 KB 812.0 KB 900.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 37s 3s 23s 11s 1.9 GB 106% 167.1 MB 6.1 MB 155.8 MB 6.2 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (HCC1395_tumor) 40s 1s 27s 12s 1.9 GB 113% 333.1 MB 9.7 MB 318.4 MB 9.7 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_Blood) 39s 2s 25s 12s 2.8 GB 107% 213.3 MB 7.4 MB 200.7 MB 7.4 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 44s 3s 30s 11s 2.8 GB 123% 720.7 MB 14.8 MB 696.3 MB 14.9 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 18s 4s 4s 10s 8.9 MB 126% 155.6 MB 125.8 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_tumor) 26s 4s 11s 11s 9.0 MB 123% 318.0 MB 131.5 KB 0 bytes 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_Blood) 20s 5s 5s 10s 9.1 MB 129% 199.3 MB 128.0 KB 0 bytes 128.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue) 30s 3s 17s 10s 9.2 MB 131% 694.7 MB 132.8 KB 31.7 MB 132.0 KB 1
succeeded NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (HCC1395_BL) 3s 1s 0s 1s 17.5 MB 4299% 11.2 MB 21.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:GENERATE_CHIP_REPORT (Sig_18_Blood) 9s 8s 0s 0s 13.9 MB 4221% 11.1 MB 21.6 KB 0 bytes 32.0 KB 1
succeeded NFCORE_SAREK:SAREK:MULTIQC 45s 21s 14s 9s 1.0 GB 208% 83.9 MB 24.2 MB 0 bytes 23.7 MB 1
succeeded NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv) 13s 12s 0s 0s 17.9 MB 93% 1.7 MB 1.3 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_BLACKLIST:BCFTOOLS_ANNOTATE (custom_Sig_18_tumor_normal;manta) 16s 14s - - 3.3 MB 6603% 179.8 KB 19.4 KB 0 bytes 32.0 KB 1
304 items found |
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