succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (HCC1395_BL;HCC1395_BL) 20s 2s 8s 10s 7.9 MB 100% 3.2 GB 268.0 KB 0 bytes 272.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:SAMTOOLS_MPILEUP (Sig_18_Blood;Sig_18_Blood) 19s 2s 8s 9s 53.9 MB 100% 3.3 GB 404.7 KB 0 bytes 412.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (HCC1395_BL;sentieon_haplotyper) 3s 2s - - 0 bytes 40% 133.9 KB 5.2 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:TABIX_TABIX (Sig_18_Blood;sentieon_haplotyper) 3s 1s - - 3.3 MB 103% 136.2 KB 5.2 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BGZIPTABIX_GERMLINE_CNV (HCC1395_BL;null) 4s 2s - - 3.2 MB 89% 114.3 KB 5.3 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BGZIPTABIX_GERMLINE_CNV (Sig_18_Blood;null) 5s 3s - - 3.3 MB 90% 114.3 KB 5.3 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:GERMLINE_CNV (HCC1395_BL) 1m 50s 1m 21s 19s 9s 447.2 MB 148% 3.2 GB 187.7 KB 0 bytes 196.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:GERMLINE_CNV (Sig_18_Blood) 1m 50s 1m 22s 18s 9s 474.8 MB 158% 3.2 GB 187.7 KB 0 bytes 196.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (HCC1395_BL) 1m 10s 1m 7s - - 3.3 MB 122% 2.1 MB 108.4 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_NORMAL (Sig_18_Blood) 1m 11s 1m 8s - - 3.2 MB 115% 2.2 MB 108.4 KB 0 bytes 112.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (HCC1395_tumor) 1m 8s 1m 5s - - 3.3 MB 72% 2.3 MB 108.4 KB 0 bytes 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_ESTIMATE_SEX_TUMOR (Sig_18_tissue) 1m 13s 1m 8s - - 3.2 MB 107% 2.6 MB 108.5 KB 0 bytes 116.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (custom_Sig_18_tumor_normal) 2m 15s 21s 1m 45s 9s 2.1 GB 131% 9.5 GB 6.0 MB 0 bytes 5.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (HCC1395_tumor_vs_HCC1395_BL) 1m 28s 21s 58s 9s 2.1 GB 164% 6.5 GB 5.6 MB 0 bytes 5.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (custom_Sig_18_tumor_normal) 22s 17s 4s 1s 133.0 MB 152% 75.3 MB 68.3 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_CALL (HCC1395_tumor_vs_HCC1395_BL) 20s 15s 3s 2s 167.9 MB 543% 75.3 MB 68.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (custom_Sig_18_tumor_normal) 6s 2s 3s 1s 167.7 MB 630% 75.3 MB 69.3 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_EXPORT (HCC1395_tumor_vs_HCC1395_BL) 22s 17s 4s 1s 133.4 MB 144% 75.3 MB 69.6 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (custom_Sig_18_tumor_normal) 22s 17s 4s 1s 133.6 MB 191% 75.4 MB 68.0 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_GENEMETRICS (HCC1395_tumor_vs_HCC1395_BL) 20s 15s 3s 2s 168.1 MB 408% 75.4 MB 68.0 KB 0 bytes 84.0 KB 1
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