[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXxMcOZy/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXxMcOZy/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXxMcOZy/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXxMcOZy/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXxMcOZy/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed.gz.tbi
[2026-06-04T19:27:57.085300Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-04T19:27:57.086261Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] pyFlowClientWorkflowClass: MantaWorkflow
[2026-06-04T19:27:57.086275Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-04T19:27:57.086279Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-04T19:27:57.086283Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXxMcOZy'
[2026-06-04T19:27:57.086287Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/manta/runWorkflow.py -m local -j 14'
[2026-06-04T19:27:57.086294Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-04T19:27:57.086298Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] [RunParameters] nCores: 14
[2026-06-04T19:27:57.086301Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-04T19:27:57.086305Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/manta/workspace/pyflow.data
[2026-06-04T19:27:57.086311Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-04T19:27:57.086315Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-04T19:27:57.086318Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-04T19:27:57.086322Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-04T19:27:57.087087Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-04T19:27:57.087179Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [MantaWorkflow] Initiating Manta workflow version: 1.6.0
[2026-06-04T19:27:57.087416Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'getAlignmentStats_makeTmpDir' to master workflow
[2026-06-04T19:27:57.088385Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_000' to master workflow
[2026-06-04T19:27:57.088508Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'getAlignmentStats_makeTmpDir' from master workflow
[2026-06-04T19:27:57.088681Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'getAlignmentStats_generateStats_001' to master workflow
[2026-06-04T19:27:57.088884Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'getAlignmentStats_mergeStats' to master workflow
[2026-06-04T19:27:57.089258Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'getAlignmentStats_removeTmpDir' to master workflow
[2026-06-04T19:27:57.089522Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'summarizeStats' to master workflow
[2026-06-04T19:27:57.089927Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'makeGraphTmpDir' to master workflow
[2026-06-04T19:27:57.092168Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:getAlignmentStats_makeTmpDir] Task initiated on local node
[2026-06-04T19:27:57.123458Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'getAlignmentStats_makeTmpDir' launched from master workflow
[2026-06-04T19:27:57.123812Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_000' from master workflow
[2026-06-04T19:27:57.124310Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'getAlignmentStats_generateStats_001' from master workflow
[2026-06-04T19:27:57.126986Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:getAlignmentStats_generateStats_000] Task initiated on local node
[2026-06-04T19:27:57.127843Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:getAlignmentStats_generateStats_001] Task initiated on local node
[2026-06-04T19:27:57.418273Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' to master workflow
[2026-06-04T19:27:57.733983Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' to master workflow
[2026-06-04T19:27:57.734275Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding sub-workflow task 'mergeLocusGraphInputList' to master workflow
[2026-06-04T19:27:57.734377Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'mergeLocusGraph' to master workflow
[2026-06-04T19:27:57.734449Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'checkLocusGraph' to master workflow
[2026-06-04T19:27:57.734518Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'removeTmpDir' to master workflow
[2026-06-04T19:27:57.734584Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'locusGraphStats' to master workflow
[2026-06-04T19:27:57.734819Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'makeHyGenDir' to master workflow
[2026-06-04T19:27:57.734947Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'generateCandidateSV_0000' to master workflow
[2026-06-04T19:27:57.735039Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortCandidateSV' to master workflow
[2026-06-04T19:27:57.735152Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding sub-workflow task 'sortCandidateSVInputList' to master workflow
[2026-06-04T19:27:57.735221Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'sort_sortCandidateSV' to master workflow
[2026-06-04T19:27:57.735285Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'tabix_sortCandidateSV' to master workflow
[2026-06-04T19:27:57.735350Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortDiploidSV' to master workflow
[2026-06-04T19:27:57.735447Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding sub-workflow task 'sortDiploidSVInputList' to master workflow
[2026-06-04T19:27:57.735521Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'sort_sortDiploidSV' to master workflow
[2026-06-04T19:27:57.735587Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'tabix_sortDiploidSV' to master workflow
[2026-06-04T19:27:57.735655Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'fixVcfHeader_sortSomaticSV' to master workflow
[2026-06-04T19:27:57.735752Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding sub-workflow task 'sortSomaticSVInputList' to master workflow
[2026-06-04T19:27:57.735818Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'sort_sortSomaticSV' to master workflow
[2026-06-04T19:27:57.735892Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'tabix_sortSomaticSV' to master workflow
[2026-06-04T19:27:57.735967Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'extractSmallIndels' to master workflow
[2026-06-04T19:27:57.736031Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'extractSmallIndels_tabix' to master workflow
[2026-06-04T19:27:57.736128Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding sub-workflow task 'sortEdgeRuntimeLogsInputList' to master workflow
[2026-06-04T19:27:57.736196Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Adding command task 'sortEdgeRuntimeLogs' to master workflow
[2026-06-04T19:27:57.736237Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-04T19:27:59.570976Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_000' launched from master workflow
[2026-06-04T19:28:07.492448Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'getAlignmentStats_generateStats_001' launched from master workflow
[2026-06-04T19:28:07.493276Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'getAlignmentStats_mergeStats' from master workflow
[2026-06-04T19:28:07.495812Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:getAlignmentStats_mergeStats] Task initiated on local node
[2026-06-04T19:28:07.525310Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'getAlignmentStats_mergeStats' launched from master workflow
[2026-06-04T19:28:07.525690Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'getAlignmentStats_removeTmpDir' from master workflow
[2026-06-04T19:28:07.525954Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'makeGraphTmpDir' from master workflow
[2026-06-04T19:28:07.526424Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'summarizeStats' from master workflow
[2026-06-04T19:28:07.528753Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:getAlignmentStats_removeTmpDir] Task initiated on local node
[2026-06-04T19:28:07.530038Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:makeGraphTmpDir] Task initiated on local node
[2026-06-04T19:28:07.531013Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:summarizeStats] Task initiated on local node
[2026-06-04T19:28:07.560158Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'getAlignmentStats_removeTmpDir' launched from master workflow
[2026-06-04T19:28:07.560215Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'makeGraphTmpDir' launched from master workflow
[2026-06-04T19:28:07.560235Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'summarizeStats' launched from master workflow
[2026-06-04T19:28:07.560530Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' from master workflow
[2026-06-04T19:28:07.560799Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' from master workflow
[2026-06-04T19:28:07.579631Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000] Task initiated on local node
[2026-06-04T19:28:07.580744Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000] Task initiated on local node
[2026-06-04T19:28:24.329839Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-5117103-5117231_0000_to_chromId_020_chr21-39269899-39270033_0000' launched from master workflow
[2026-06-04T19:28:35.096513Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'makeLocusGraph_chromId_020_chr21-39270283-39270433_0000_to_chromId_020_chr21-46664295-46664374_0000' launched from master workflow
[2026-06-04T19:28:35.097180Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching sub-workflow task: 'mergeLocusGraphInputList' from master workflow
[2026-06-04T19:28:35.097546Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:mergeLocusGraphInputList] Starting task specification for sub-workflow
[2026-06-04T19:28:35.097777Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:mergeLocusGraphInputList] Finished task specification for sub-workflow
[2026-06-04T19:28:35.098813Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed sub-workflow task: 'mergeLocusGraphInputList' launched from master workflow
[2026-06-04T19:28:35.099104Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'mergeLocusGraph' from master workflow
[2026-06-04T19:28:35.101754Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:mergeLocusGraph] Task initiated on local node
[2026-06-04T19:28:35.163011Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'mergeLocusGraph' launched from master workflow
[2026-06-04T19:28:35.163343Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'locusGraphStats' from master workflow
[2026-06-04T19:28:35.163660Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'checkLocusGraph' from master workflow
[2026-06-04T19:28:35.164081Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'removeTmpDir' from master workflow
[2026-06-04T19:28:35.166774Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:locusGraphStats] Task initiated on local node
[2026-06-04T19:28:35.167987Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:checkLocusGraph] Task initiated on local node
[2026-06-04T19:28:35.168686Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:removeTmpDir] Task initiated on local node
[2026-06-04T19:28:35.197410Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'locusGraphStats' launched from master workflow
[2026-06-04T19:28:35.197452Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'checkLocusGraph' launched from master workflow
[2026-06-04T19:28:35.197470Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'removeTmpDir' launched from master workflow
[2026-06-04T19:28:35.197740Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'makeHyGenDir' from master workflow
[2026-06-04T19:28:35.199919Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:makeHyGenDir] Task initiated on local node
[2026-06-04T19:28:35.229561Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'makeHyGenDir' launched from master workflow
[2026-06-04T19:28:35.229827Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'generateCandidateSV_0000' from master workflow
[2026-06-04T19:28:35.232010Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:generateCandidateSV_0000] Task initiated on local node
[2026-06-04T19:28:40.444380Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'generateCandidateSV_0000' launched from master workflow
[2026-06-04T19:28:40.444685Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching sub-workflow task: 'sortEdgeRuntimeLogsInputList' from master workflow
[2026-06-04T19:28:40.444914Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Starting task specification for sub-workflow
[2026-06-04T19:28:40.445157Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'fixVcfHeader_sortSomaticSV' from master workflow
[2026-06-04T19:28:40.445222Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sortEdgeRuntimeLogsInputList] Finished task specification for sub-workflow
[2026-06-04T19:28:40.445577Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'fixVcfHeader_sortDiploidSV' from master workflow
[2026-06-04T19:28:40.445775Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'fixVcfHeader_sortCandidateSV' from master workflow
[2026-06-04T19:28:40.446613Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed sub-workflow task: 'sortEdgeRuntimeLogsInputList' launched from master workflow
[2026-06-04T19:28:40.449994Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:fixVcfHeader_sortCandidateSV] Task initiated on local node
[2026-06-04T19:28:40.451686Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:fixVcfHeader_sortDiploidSV] Task initiated on local node
[2026-06-04T19:28:40.451850Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'sortEdgeRuntimeLogs' from master workflow
[2026-06-04T19:28:40.452054Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:fixVcfHeader_sortSomaticSV] Task initiated on local node
[2026-06-04T19:28:40.454247Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sortEdgeRuntimeLogs] Task initiated on local node
[2026-06-04T19:28:40.483858Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'fixVcfHeader_sortCandidateSV' launched from master workflow
[2026-06-04T19:28:40.484113Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching sub-workflow task: 'sortCandidateSVInputList' from master workflow
[2026-06-04T19:28:40.484325Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sortCandidateSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:28:40.484474Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sortCandidateSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:28:40.484719Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed sub-workflow task: 'sortCandidateSVInputList' launched from master workflow
[2026-06-04T19:28:40.484982Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'sort_sortCandidateSV' from master workflow
[2026-06-04T19:28:40.485495Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'fixVcfHeader_sortDiploidSV' launched from master workflow
[2026-06-04T19:28:40.485792Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching sub-workflow task: 'sortDiploidSVInputList' from master workflow
[2026-06-04T19:28:40.486220Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sortDiploidSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:28:40.486401Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'fixVcfHeader_sortSomaticSV' launched from master workflow
[2026-06-04T19:28:40.487515Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sortDiploidSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:28:40.488243Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sort_sortCandidateSV] Task initiated on local node
[2026-06-04T19:28:40.488407Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching sub-workflow task: 'sortSomaticSVInputList' from master workflow
[2026-06-04T19:28:40.488576Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sortSomaticSVInputList] Starting task specification for sub-workflow
[2026-06-04T19:28:40.488765Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'sortEdgeRuntimeLogs' launched from master workflow
[2026-06-04T19:28:40.488802Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed sub-workflow task: 'sortDiploidSVInputList' launched from master workflow
[2026-06-04T19:28:40.488942Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sortSomaticSVInputList] Finished task specification for sub-workflow
[2026-06-04T19:28:40.489234Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'sort_sortDiploidSV' from master workflow
[2026-06-04T19:28:40.489597Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed sub-workflow task: 'sortSomaticSVInputList' launched from master workflow
[2026-06-04T19:28:40.489851Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'sort_sortSomaticSV' from master workflow
[2026-06-04T19:28:40.492061Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sort_sortDiploidSV] Task initiated on local node
[2026-06-04T19:28:40.492933Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:sort_sortSomaticSV] Task initiated on local node
[2026-06-04T19:28:40.555050Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'sort_sortSomaticSV' launched from master workflow
[2026-06-04T19:28:40.555116Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'sort_sortCandidateSV' launched from master workflow
[2026-06-04T19:28:40.555136Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'sort_sortDiploidSV' launched from master workflow
[2026-06-04T19:28:40.555339Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'tabix_sortCandidateSV' from master workflow
[2026-06-04T19:28:40.555842Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'tabix_sortDiploidSV' from master workflow
[2026-06-04T19:28:40.557499Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'extractSmallIndels' from master workflow
[2026-06-04T19:28:40.558157Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:tabix_sortCandidateSV] Task initiated on local node
[2026-06-04T19:28:40.559364Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'tabix_sortSomaticSV' from master workflow
[2026-06-04T19:28:40.560046Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:tabix_sortDiploidSV] Task initiated on local node
[2026-06-04T19:28:40.562022Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:extractSmallIndels] Task initiated on local node
[2026-06-04T19:28:40.563191Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:tabix_sortSomaticSV] Task initiated on local node
[2026-06-04T19:28:40.591329Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'tabix_sortDiploidSV' launched from master workflow
[2026-06-04T19:28:40.606850Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'tabix_sortCandidateSV' launched from master workflow
[2026-06-04T19:28:40.606897Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'tabix_sortSomaticSV' launched from master workflow
[2026-06-04T19:28:40.606917Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'extractSmallIndels' launched from master workflow
[2026-06-04T19:28:40.607090Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Launching command task: 'extractSmallIndels_tabix' from master workflow
[2026-06-04T19:28:40.609105Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskRunner:extractSmallIndels_tabix] Task initiated on local node
[2026-06-04T19:28:40.638903Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [TaskManager] Completed command task: 'extractSmallIndels_tabix' launched from master workflow
[2026-06-04T19:28:45.857840Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Manta workflow successfully completed.
[2026-06-04T19:28:45.857840Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] 
[2026-06-04T19:28:45.857840Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] 	workflow version: 1.6.0
[2026-06-04T19:28:45.857921Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] 
[2026-06-04T19:28:45.857929Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-04T19:28:45.857934Z] [nf-20185a7a73aa2e2ab0aa8a1886a87d4c-36614-xksnq] [619_1] [WorkflowRunner] Elapsed time for full workflow: 48 sec