.command.log - Workdir - NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (HCC1395_BL;germline_cnv)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/1b714acbd3deb1c12bb790c5f52f04/.command.log
Size: 676 bytes
Task: NFCORE_SAREK:SAREK:VCF_ANNOTATE_ALL:VCF_ANNOTATE_MERGE:ENSEMBLVEP_VEP (HCC1395_BL;germline_cnv)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/1b714acbd3deb1c12bb790c5f52f04/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/1b714acbd3deb1c12bb790c5f52f04/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4c/fafd348db35f3d967b772f54cc26d7/HCC1395_BL_custom.ann_snpEff.ann.vcf.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/annotation-cache/vep_cache/113_GRCh38
==> STAGING COMPLETE (4 inputs)

2026-06-04 19:38:53 - INFO: Disabling --hgvs; using --offline and no FASTA file found
ls: *.tab.gz: No such file or directory
ls: *.json.gz: No such file or directory