Sample	samtools_flagstat_stats-error_rate	samtools_flagstat_stats-non_primary_alignments	samtools_flagstat_stats-reads_mapped	samtools_flagstat_stats-reads_mapped_percent	samtools_flagstat_stats-reads_properly_paired_percent	samtools_flagstat_stats-reads_MQ0_percent	samtools_flagstat_stats-raw_total_sequences	samtools_flagstat_stats-insert_size_average	mosdepth-1_x_pc	mosdepth-5_x_pc	mosdepth-10_x_pc	mosdepth-30_x_pc	mosdepth-50_x_pc	mosdepth-median_coverage	bcftools_stats-number_of_records	bcftools_stats-number_of_SNPs	bcftools_stats-number_of_indels	bcftools_stats-tstv	bcftools_stats-number_of_MNPs	bcftools_stats-number_of_multiallelic_sites	bcftools_stats-number_of_multiallelic_SNP_sites	snpeff-Change_rate	snpeff-Ts_Tv_ratio	snpeff-Number_of_variants_before_filter
HCC1395_BL	0.44925149999999997	0.0	1.953366	99.99918090777943	99.93109386694461	12.951793351223673	1.953382	301.7	100.0	100.0	100.0	100.0	99.0	149	4	0	0	0.0	0	0	0			
HCC1395_BL.deconflicted_germline															354	334	20	3.58	0	0	0			
HCC1395_BL.deconflicted_germline_custom.ann_snpEff																						131949.0	3.460784	0.000354
HCC1395_BL_custom.ann_snpEff																						193675569.0	0.0	4e-06
HCC1395_tumor	0.4525574	0.0	5.349282	99.99936440472015	99.89430424375752	13.118966985685645	5.349316	292.3	100.0	100.0	100.0	100.0	100.0	334										
HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv															3	0	0	0.0	0	0	0			
HCC1395_tumor_vs_HCC1395_BL.manta.diploid_sv_custom.ann_snpEff																						15569994.0	0.0	3e-06
HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv															2	0	0	0.0	0	0	0			
HCC1395_tumor_vs_HCC1395_BL.manta.somatic_sv_custom.ann_snpEff																						23354991.0	0.0	2e-06
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels															42	0	42	0.0	0	0	0			
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_indels_custom.ann_snpEff																						1112142.0	0.0	4.2e-05
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs															300	300	0	1.07	0	0	0			
HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff																						155699.0	1.068966	0.0003
Sig_18_Blood	0.4577852	0.0	2.4785649999999997	99.99923343328288	99.95505498300643	12.392721005219109	2.4785839999999997	309.3	100.0	100.0	100.0	100.0	99.0	195	4	0	0	0.0	0	0	0			
Sig_18_Blood.deconflicted_germline															395	369	26	2.93	0	0	0			
Sig_18_Blood.deconflicted_germline_custom.ann_snpEff																						118253.0	2.864662	0.000395
Sig_18_Blood_custom.ann_snpEff																						193675569.0	0.0	4e-06
Sig_18_tissue	0.4201612	0.0	12.309648	99.99936635470196	99.88912832015919	12.016709388982338	12.309726	239.5	100.0	100.0	100.0	100.0	100.0	838										
custom_Sig_18_tumor_normal.manta.diploid_sv															6	0	3	0.0	0	0	0			
custom_Sig_18_tumor_normal.manta.diploid_sv_custom.ann_snpEff																						7784997.0	0.0	6e-06
custom_Sig_18_tumor_normal.manta.somatic_sv															0	0	0	0.0	0	0	0			
custom_Sig_18_tumor_normal.manta.somatic_sv_custom.ann_snpEff																						0.0	0.0	0.0
custom_Sig_18_tumor_normal.strelka.somatic_indels															88	0	88	0.0	0	0	0			
custom_Sig_18_tumor_normal.strelka.somatic_indels_custom.ann_snpEff																						530795.0	0.0	8.8e-05
custom_Sig_18_tumor_normal.strelka.somatic_snvs															237	237	0	1.24	0	0	0			
custom_Sig_18_tumor_normal.strelka.somatic_snvs_custom.ann_snpEff																						197088.0	1.235849	0.000237