.command.log - Workdir - NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (HCC1395_tumor_vs_HCC1395_BL)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/ed83adfa86063635e22c3333e33755/.command.log
Size: 640 bytes
Task: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:VCF_SOMATIC_SNV_INDEL:LABEL_HOTSPOTS (HCC1395_tumor_vs_HCC1395_BL)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/ed83adfa86063635e22c3333e33755/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/ed83adfa86063635e22c3333e33755/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/b122784cdcd5efe3d850af2519e934/HCC1395_tumor_vs_HCC1395_BL.snv_indel.phased.vep.vcf.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/hotspots/hotspot_definitions.tsv
==> STAGING COMPLETE (4 inputs)

Loaded 73 hotspot definitions
Processed 187 variants, labeled 0 as HOTSPOT