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Sig_18_tissue_vs_Sig_18_Blood.strelka.somatic_indels_custom.ann_snpEff.csv
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Published
Feb 02, 2026 1:48 PM

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# Summary table
Name , Value
Genome , GRCh38.105
Date , 2026-02-02 21:47
SnpEff_version , SnpEff 5.1d (build 2022-04-19 15:49), by Pablo Cingolani
Command_line_arguments , SnpEff GRCh38.105 -csvStats Sig_18_tissue_vs_Sig_18_Blood.strelka.somatic_indels_custom.ann_snpEff.csv Sig_18_tissue_vs_Sig_18_Blood.strelka.somatic_indels_custom.ann.vcf.gz
Warnings , 13
Number_of_lines_in_input_file, 19
Number_of_variants_before_filter, 19
Number_of_not_variants , 0
Number_of_variants_processed , 19
Number_of_known_variants (i.e. non-empty ID) , 0, 0%
Number_of_effects , 27
Genome_total_length ,63147197748
Genome_effective_length ,46709983
Change_rate , 2458420
# Change rate by chromosome
Chromosome , Length , Changes , Change_rate
21 , 46709983 , 19 , 2458420
# Variantss by type
Type , Count , Percent
DEL , 16 , 84.210526%
INS , 3 , 15.789474%
# Effects by impact
Type , Count , Percent
HIGH , 10 , 37.037037%
MODERATE , 5 , 18.518519%
MODIFIER , 12 , 44.444444%
# Effects by functional class
Type , Count , Percent
Missense_Silent_ratio, 0
# Count by effects
Type , Count , Percent
3_prime_UTR_variant , 1 , 3.703704%
conservative_inframe_deletion , 1 , 3.703704%
disruptive_inframe_deletion , 4 , 14.814815%
downstream_gene_variant , 4 , 14.814815%
frameshift_variant , 10 , 37.037037%
intron_variant , 3 , 11.111111%
non_coding_transcript_exon_variant , 2 , 7.407407%
upstream_gene_variant , 2 , 7.407407%
# Count by genomic region
Type , Count , Percent
DOWNSTREAM , 4 , 14.814815%
EXON , 17 , 62.962963%
INTRON , 3 , 11.111111%
UPSTREAM , 2 , 7.407407%
UTR_3_PRIME , 1 , 3.703704%
# Quality
# InDel lengths
Values , 0,1
Count , 3,16
# Base changes
base , A , C , G , T
A , 0 , 0 , 0 , 0
C , 0 , 0 , 0 , 0
G , 0 , 0 , 0 , 0
T , 0 , 0 , 0 , 0
# Ts/Tv summary
Transitions , 0
Transversions , 0
Ts_Tv_ratio , 0
# Ts/Tv : All variants
No results available (empty input?)
# Ts/Tv : Known variants
No results available (empty input?)
# Allele frequency
# Allele frequency : All variants
Values , 0
Count , 19
# Allele Count
Values , 0
Count , 19
# Hom/Het table
Sample_names , NORMAL, TUMOR
Reference , 0, 0
Het , 0, 0
Hom , 0, 0
Missing , 19, 19
# Codon change table
codons , - , AAA , AAC , AGG , CCG , CGC , CGG , CTG , GAA , GAG , GAT , GCC , GCG , GGA , TGC , TTC , TTT
- , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
AAA , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
AAC , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
AGG , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
CCG , 3 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
CGC , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
CGG , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
CTG , 0 , 0 , 0 , 0 , 1 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
GAA , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
GAG , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
GAT , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
GCC , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0
GCG , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
GGA , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
TGC , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
TTC , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1
TTT , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
# Amino acid change table
aa , - , ? , A , C , D , E , F , G , K , L , N , P , R
- , 0 , 3 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
? , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
A , 1 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
C , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
D , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0
E , 3 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
F , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0
G , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1
K , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
L , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 1
N , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0
P , 3 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
R , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0
# Chromosome change table
21, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000
21,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,1,0,0,1,1,0,1,2,0,1,0,6,0,0,2,1,2
156 rows