|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_SOMATIC (HCC1395_BL)
|
13s |
11s |
0s |
1s |
14.0 MB |
4429% |
11.3 MB |
57.5 KB |
0 bytes |
64.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_SOMATIC (Sig_18_Blood)
|
5s |
3s |
0s |
1s |
13.7 MB |
4332% |
11.3 MB |
57.1 KB |
0 bytes |
64.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:ANNOTATE_VCF_READCOUNTS (HCC1395_BL)
|
10s |
8s |
0s |
1s |
11.9 MB |
96% |
3.2 MB |
52.3 KB |
0 bytes |
60.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:ANNOTATE_VCF_READCOUNTS (Sig_18_Blood)
|
9s |
7s |
0s |
1s |
12.5 MB |
99% |
3.2 MB |
51.1 KB |
0 bytes |
60.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BAMREADCOUNT_BLOOD (HCC1395_BL)
|
24s |
6s |
9s |
9s |
74.8 MB |
100% |
3.2 GB |
187.0 KB |
0 bytes |
200.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BAMREADCOUNT_BLOOD (Sig_18_Blood)
|
23s |
6s |
10s |
7s |
71.1 MB |
100% |
3.1 GB |
187.6 KB |
0 bytes |
196.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BAMREADCOUNT_TUMOR (HCC1395_BL)
|
24s |
5s |
10s |
9s |
72.6 MB |
101% |
3.2 GB |
187.8 KB |
0 bytes |
196.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BAMREADCOUNT_TUMOR (Sig_18_Blood)
|
24s |
5s |
10s |
9s |
73.7 MB |
100% |
3.1 GB |
188.9 KB |
0 bytes |
196.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BCFTOOLS_QUERY (HCC1395_BL)
|
5s |
4s |
0s |
0s |
18.9 MB |
5432% |
202.4 KB |
2.4 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_READCOUNT_ANNOTATION:BCFTOOLS_QUERY (Sig_18_Blood)
|
9s |
8s |
0s |
0s |
31.4 MB |
5352% |
202.6 KB |
2.4 KB |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (HCC1395_tumor_vs_HCC1395_BL)
|
35s |
27s |
6s |
1s |
85.8 MB |
537% |
26.9 MB |
671 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_CONTAMINATION (Sig_18_tissue_vs_Sig_18_Blood)
|
21s |
3s |
16s |
1s |
87.0 MB |
268% |
29.3 MB |
672 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL)
|
56s |
37s |
6s |
12s |
933.8 MB |
211% |
207.4 MB |
1.3 MB |
67.5 MB |
1.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_tumor)
|
21s |
2s |
7s |
11s |
832.9 MB |
203% |
262.1 MB |
2.1 MB |
151.2 MB |
2.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_Blood)
|
44s |
28s |
6s |
9s |
961.8 MB |
205% |
215.3 MB |
1.5 MB |
77.6 MB |
1.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue)
|
20s |
2s |
8s |
9s |
909.7 MB |
180% |
310.3 MB |
4.4 MB |
241.7 MB |
4.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL)
|
48s |
14s |
22s |
12s |
464.6 MB |
142% |
159.9 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL)
|
55s |
15s |
31s |
9s |
466.1 MB |
132% |
160.7 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_tumor)
|
59s |
3s |
45s |
11s |
484.9 MB |
121% |
308.4 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_tumor)
|
43s |
3s |
29s |
11s |
463.5 MB |
131% |
307.6 MB |
3.3 MB |
0 bytes |
3.3 MB |
1 |