File Info
- Filename
- 1029_BG5-T1-TDNA-1_23FC2GLT4_s29_vs_1029_BG5-N1-BDNA-1_2375WFLT3_s29.tnseq.orientation_data.tsv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/69812fed/test_regression_recal_dev_b0193075/variant_calling/tnseq/1029_BG5-T1-TDNA-1_23FC2GLT4_s29_vs_1029_BG5-N1-BDNA-1_2375WFLT3_s29/1029_BG5-T1-TDNA-1_23FC2GLT4_s29_vs_1029_BG5-N1-BDNA-1_2375WFLT3_s29.tnseq.orientation_data.tsv
- Size
- 8.9 KB
- Workflow Run
- mipeters-regression-recal-dev-69812fed
- Published
- Feb 02, 2026 3:25 PM
Content
View in new tab| #<METADATA>SAMPLE=1029_BG5_1029_BG5-T1-TDNA-1_23FC2GLT4_s29 | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 8.90693e-07 | 1.96166e-06 | 9.69531e-08 | 0 | 7.7897e-08 | 5.54024e-07 | 1.28656e-07 | 0.999186 | 4.82975e-06 | 0.000656169 | 0.000149721 | 1430193 | 3868 |
| AAC | GTT | 0 | 1.69214e-07 | 1.47389e-06 | 1.26025e-07 | 0 | 1.57591e-06 | 1.99437e-06 | 1.83495e-07 | 0.998805 | 1.50565e-05 | 0.000888904 | 0.000285121 | 868539 | 2684 |
| AAG | CTT | 0 | 8.27933e-08 | 6.15272e-06 | 9.94778e-08 | 0 | 7.82316e-08 | 8.69704e-06 | 3.32019e-07 | 0.998605 | 5.3214e-06 | 0.0011582 | 0.000215604 | 1408273 | 5873 |
| AAT | ATT | 0 | 1.19639e-06 | 4.91896e-07 | 1.18589e-07 | 0 | 1.58579e-07 | 3.2322e-07 | 1.59182e-07 | 0.998856 | 2.29944e-05 | 0.000858491 | 0.0002597 | 977300 | 2885 |
| ACA | TGT | 1.62448e-06 | 0 | 1.03154e-07 | 0.000114438 | 1.00748e-06 | 0 | 9.46485e-08 | 2.09978e-05 | 0.997337 | 2.62995e-06 | 0.00230599 | 0.000216567 | 1211958 | 8744 |
| ACC | GGT | 1.37808e-06 | 0 | 1.26206e-07 | 0.000137537 | 1.24513e-06 | 0 | 1.15044e-07 | 6.41459e-06 | 0.997818 | 3.63687e-06 | 0.00184833 | 0.000182973 | 1007477 | 6407 |
| ACG | CGT | 3.55627e-07 | 0 | 2.48743e-07 | 0.000498511 | 3.7984e-07 | 0 | 2.64153e-07 | 0.000135522 | 0.991941 | 0.000201799 | 0.00600324 | 0.00121877 | 429285 | 6000 |
| ACT | AGT | 5.37438e-07 | 0 | 1.34381e-07 | 8.68614e-05 | 7.75267e-07 | 0 | 1.14496e-07 | 2.61957e-06 | 0.997642 | 5.00474e-06 | 0.00195621 | 0.000305523 | 978575 | 6210 |
| AGA | TCT | 3.44293e-06 | 8.14796e-08 | 0 | 2.37712e-06 | 1.55235e-05 | 8.36115e-08 | 0 | 7.68915e-07 | 0.998345 | 3.29845e-06 | 0.00148506 | 0.000143991 | 1458811 | 7385 |
| AGC | GCT | 2.46401e-05 | 8.21767e-08 | 0 | 2.59239e-06 | 0.000177195 | 8.67198e-08 | 0 | 3.0718e-07 | 0.997878 | 1.65029e-06 | 0.00176439 | 0.000151153 | 1433031 | 9037 |
| AGG | CCT | 3.90248e-06 | 7.25653e-08 | 0 | 5.15182e-06 | 5.30791e-05 | 6.99084e-08 | 0 | 1.37243e-05 | 0.997811 | 2.89207e-06 | 0.00194071 | 0.000169757 | 1557775 | 10595 |
| AGT | ACT | 2.61957e-06 | 1.14496e-07 | 0 | 7.75267e-07 | 8.68614e-05 | 1.34381e-07 | 0 | 5.37438e-07 | 0.997642 | 5.00474e-06 | 0.00195621 | 0.000305523 | 978575 | 6210 |
| ATA | TAT | 7.33158e-07 | 5.0618e-07 | 1.73816e-07 | 0 | 2.94723e-07 | 6.29121e-07 | 1.58699e-07 | 0 | 0.99849 | 2.50346e-05 | 0.00114316 | 0.000338944 | 687766 | 2501 |
| ATC | GAT | 1.46438e-07 | 2.69965e-06 | 1.24645e-07 | 0 | 1.16198e-07 | 1.05145e-06 | 1.09673e-07 | 0 | 0.999081 | 8.15792e-06 | 0.000710886 | 0.000195637 | 989351 | 2950 |
| ATG | CAT | 9.81153e-07 | 6.08209e-07 | 5.54681e-07 | 0 | 9.09292e-08 | 5.8826e-07 | 9.13999e-08 | 0 | 0.998216 | 6.13968e-05 | 0.00118256 | 0.000537201 | 1237278 | 4412 |
| ATT | AAT | 1.59182e-07 | 3.2322e-07 | 1.58579e-07 | 0 | 1.18589e-07 | 4.91896e-07 | 1.19639e-06 | 0 | 0.998856 | 2.29944e-05 | 0.000858491 | 0.0002597 | 977300 | 2885 |
| CAA | TTG | 0 | 1.10146e-07 | 2.1715e-06 | 9.36086e-08 | 0 | 1.04999e-07 | 2.88088e-06 | 1.4021e-07 | 0.998685 | 9.12061e-06 | 0.00100336 | 0.000296664 | 1184577 | 4045 |
| CAC | GTG | 0 | 9.68071e-08 | 2.35475e-06 | 9.72297e-08 | 0 | 1.09283e-07 | 1.07814e-06 | 1.81472e-07 | 0.998507 | 2.74146e-05 | 0.00103711 | 0.000424803 | 1238342 | 4265 |
| CAG | CTG | 0 | 5.56683e-08 | 3.13859e-05 | 6.88541e-08 | 0 | 5.63287e-08 | 3.00291e-05 | 2.91819e-07 | 0.998024 | 9.9451e-06 | 0.00152055 | 0.000383609 | 2020139 | 9821 |
| CAT | ATG | 0 | 9.13999e-08 | 5.8826e-07 | 9.09292e-08 | 0 | 5.54681e-07 | 6.08209e-07 | 9.81153e-07 | 0.998216 | 6.13968e-05 | 0.00118256 | 0.000537201 | 1237278 | 4412 |
| CCA | TGG | 5.16496e-05 | 0 | 2.55261e-07 | 7.93226e-05 | 1.94726e-06 | 0 | 6.54727e-08 | 5.0278e-06 | 0.997848 | 8.53703e-07 | 0.00189806 | 0.000114336 | 1726616 | 11512 |
| CCC | GGG | 7.30057e-06 | 0 | 8.09716e-08 | 0.000182028 | 1.51644e-06 | 0 | 8.12457e-08 | 1.60576e-06 | 0.997831 | 2.19593e-06 | 0.00181046 | 0.000163261 | 1377761 | 8784 |
| CCG | CGG | 4.20011e-06 | 0 | 1.53458e-07 | 0.000367964 | 4.86386e-06 | 0 | 1.69846e-07 | 5.58807e-05 | 0.99352 | 8.23172e-05 | 0.00513596 | 0.000828185 | 739996 | 9566 |
| CCT | AGG | 1.37243e-05 | 0 | 6.99084e-08 | 5.30791e-05 | 5.15182e-06 | 0 | 7.25653e-08 | 3.90248e-06 | 0.997811 | 2.89207e-06 | 0.00194071 | 0.000169757 | 1557775 | 10595 |
| CGA | TCG | 7.072e-05 | 2.50577e-07 | 0 | 9.04025e-07 | 0.000424714 | 2.41143e-07 | 0 | 1.1364e-06 | 0.994664 | 5.14695e-05 | 0.00419916 | 0.000587594 | 451778 | 4856 |
| CGC | GCG | 0.000721457 | 1.79999e-07 | 0 | 6.28442e-07 | 0.000662268 | 1.7528e-07 | 0 | 2.49054e-07 | 0.993604 | 3.59783e-05 | 0.00431434 | 0.00066049 | 633903 | 8027 |
| CGG | CCG | 5.58807e-05 | 1.69846e-07 | 0 | 4.86386e-06 | 0.000367964 | 1.53458e-07 | 0 | 4.20011e-06 | 0.99352 | 8.23172e-05 | 0.00513596 | 0.000828185 | 739996 | 9566 |
| CGT | ACG | 0.000135522 | 2.64153e-07 | 0 | 3.7984e-07 | 0.000498511 | 2.48743e-07 | 0 | 3.55627e-07 | 0.991941 | 0.000201799 | 0.00600324 | 0.00121877 | 429285 | 6000 |
| CTA | TAG | 1.68062e-06 | 6.41982e-06 | 2.17848e-07 | 0 | 2.16779e-07 | 8.97591e-06 | 2.72334e-07 | 0 | 0.998348 | 9.6917e-06 | 0.0013141 | 0.000310673 | 562610 | 2573 |
| CTC | GAG | 1.27975e-06 | 1.74424e-05 | 7.62108e-08 | 0 | 9.22619e-08 | 2.15321e-05 | 5.44578e-07 | 0 | 0.998719 | 1.61472e-06 | 0.00104242 | 0.000195851 | 1459319 | 6417 |
| CTG | CAG | 2.91819e-07 | 3.00291e-05 | 5.63287e-08 | 0 | 6.88541e-08 | 3.13859e-05 | 5.56683e-08 | 0 | 0.998024 | 9.9451e-06 | 0.00152055 | 0.000383609 | 2020139 | 9821 |
| CTT | AAG | 3.32019e-07 | 8.69704e-06 | 7.82316e-08 | 0 | 9.94778e-08 | 6.15272e-06 | 8.27933e-08 | 0 | 0.998605 | 5.3214e-06 | 0.0011582 | 0.000215604 | 1408273 | 5873 |
| GAA | TTC | 0 | 9.14092e-08 | 3.80421e-06 | 8.48779e-08 | 0 | 7.88643e-08 | 1.0498e-06 | 2.72867e-07 | 0.99916 | 2.51138e-06 | 0.000678676 | 0.000152997 | 1413462 | 4086 |
| GAC | GTC | 0 | 1.28711e-07 | 3.68377e-06 | 1.23304e-06 | 0 | 1.91451e-07 | 2.30668e-06 | 1.89511e-07 | 0.99898 | 5.34708e-06 | 0.000749329 | 0.00025753 | 928122 | 3023 |
| GAG | CTC | 0 | 5.44578e-07 | 2.15321e-05 | 9.22619e-08 | 0 | 7.62108e-08 | 1.74424e-05 | 1.27975e-06 | 0.998719 | 1.61472e-06 | 0.00104242 | 0.000195851 | 1459319 | 6417 |
| GAT | ATC | 0 | 1.09673e-07 | 1.05145e-06 | 1.16198e-07 | 0 | 1.24645e-07 | 2.69965e-06 | 1.46438e-07 | 0.999081 | 8.15792e-06 | 0.000710886 | 0.000195637 | 989351 | 2950 |
| GCA | TGC | 2.80804e-06 | 0 | 9.01999e-08 | 9.36484e-05 | 3.94585e-06 | 0 | 8.51342e-08 | 0.000169468 | 0.99749 | 8.1906e-07 | 0.002086 | 0.000152923 | 1364839 | 9837 |
| GCC | GGC | 1.89443e-07 | 0 | 7.33022e-07 | 0.00017965 | 1.53845e-06 | 0 | 1.66708e-07 | 8.28988e-05 | 0.997707 | 1.27278e-06 | 0.00189901 | 0.00012792 | 1486111 | 9499 |
| GCG | CGC | 2.49054e-07 | 0 | 1.7528e-07 | 0.000662268 | 6.28442e-07 | 0 | 1.79999e-07 | 0.000721457 | 0.993604 | 3.59783e-05 | 0.00431434 | 0.00066049 | 633903 | 8027 |
| GCT | AGC | 3.0718e-07 | 0 | 8.67198e-08 | 0.000177195 | 2.59239e-06 | 0 | 8.21767e-08 | 2.46401e-05 | 0.997878 | 1.65029e-06 | 0.00176439 | 0.000151153 | 1433031 | 9037 |
| GGA | TCC | 2.87048e-06 | 7.89153e-08 | 0 | 1.0977e-06 | 1.29986e-05 | 7.81687e-08 | 0 | 1.13204e-06 | 0.998561 | 2.62947e-06 | 0.00130766 | 0.000110223 | 1475205 | 6771 |
| GGC | GCC | 8.28988e-05 | 1.66708e-07 | 0 | 1.53845e-06 | 0.00017965 | 7.33022e-07 | 0 | 1.89443e-07 | 0.997707 | 1.27278e-06 | 0.00189901 | 0.00012792 | 1486111 | 9499 |
| GGG | CCC | 1.60576e-06 | 8.12457e-08 | 0 | 1.51644e-06 | 0.000182028 | 8.09716e-08 | 0 | 7.30057e-06 | 0.997831 | 2.19593e-06 | 0.00181046 | 0.000163261 | 1377761 | 8784 |
| GGT | ACC | 6.41459e-06 | 1.15044e-07 | 0 | 1.24513e-06 | 0.000137537 | 1.26206e-07 | 0 | 1.37808e-06 | 0.997818 | 3.63687e-06 | 0.00184833 | 0.000182973 | 1007477 | 6407 |
| GTA | TAC | 3.87887e-07 | 1.14258e-06 | 1.95928e-07 | 0 | 1.91148e-07 | 2.13021e-06 | 1.73771e-07 | 0 | 0.998666 | 1.16007e-05 | 0.00103025 | 0.00028824 | 612938 | 2229 |
| GTC | GAC | 1.89511e-07 | 2.30668e-06 | 1.91451e-07 | 0 | 1.23304e-06 | 3.68377e-06 | 1.28711e-07 | 0 | 0.99898 | 5.34708e-06 | 0.000749329 | 0.00025753 | 928122 | 3023 |
| GTG | CAC | 1.81472e-07 | 1.07814e-06 | 1.09283e-07 | 0 | 9.72297e-08 | 2.35475e-06 | 9.68071e-08 | 0 | 0.998507 | 2.74146e-05 | 0.00103711 | 0.000424803 | 1238342 | 4265 |
| GTT | AAC | 1.83495e-07 | 1.99437e-06 | 1.57591e-06 | 0 | 1.26025e-07 | 1.47389e-06 | 1.69214e-07 | 0 | 0.998805 | 1.50565e-05 | 0.000888904 | 0.000285121 | 868539 | 2684 |
| TAA | TTA | 0 | 1.58863e-07 | 5.64101e-07 | 1.87099e-07 | 0 | 1.62756e-07 | 6.85646e-07 | 2.11878e-06 | 0.99884 | 6.12976e-06 | 0.000916009 | 0.000234141 | 657190 | 2153 |
| TAC | GTA | 0 | 1.73771e-07 | 2.13021e-06 | 1.91148e-07 | 0 | 1.95928e-07 | 1.14258e-06 | 3.87887e-07 | 0.998666 | 1.16007e-05 | 0.00103025 | 0.00028824 | 612938 | 2229 |
| TAG | CTA | 0 | 2.72334e-07 | 8.97591e-06 | 2.16779e-07 | 0 | 2.17848e-07 | 6.41982e-06 | 1.68062e-06 | 0.998348 | 9.6917e-06 | 0.0013141 | 0.000310673 | 562610 | 2573 |
| TAT | ATA | 0 | 1.58699e-07 | 6.29121e-07 | 2.94723e-07 | 0 | 1.73816e-07 | 5.0618e-07 | 7.33158e-07 | 0.99849 | 2.50346e-05 | 0.00114316 | 0.000338944 | 687766 | 2501 |
| TCA | TGA | 7.42769e-06 | 0 | 8.4264e-08 | 1.41463e-05 | 1.64893e-06 | 0 | 9.09748e-08 | 4.30265e-06 | 0.998168 | 1.09406e-06 | 0.00168008 | 0.000123382 | 1357049 | 7537 |
| TCC | GGA | 1.13204e-06 | 0 | 7.81687e-08 | 1.29986e-05 | 1.0977e-06 | 0 | 7.89153e-08 | 2.87048e-06 | 0.998561 | 2.62947e-06 | 0.00130766 | 0.000110223 | 1475205 | 6771 |
| TCG | CGA | 1.1364e-06 | 0 | 2.41143e-07 | 0.000424714 | 9.04025e-07 | 0 | 2.50577e-07 | 7.072e-05 | 0.994664 | 5.14695e-05 | 0.00419916 | 0.000587594 | 451778 | 4856 |
| TCT | AGA | 7.68915e-07 | 0 | 8.36115e-08 | 1.55235e-05 | 2.37712e-06 | 0 | 8.14796e-08 | 3.44293e-06 | 0.998345 | 3.29845e-06 | 0.00148506 | 0.000143991 | 1458811 | 7385 |
| TGA | TCA | 4.30265e-06 | 9.09748e-08 | 0 | 1.64893e-06 | 1.41463e-05 | 8.4264e-08 | 0 | 7.42769e-06 | 0.998168 | 1.09406e-06 | 0.00168008 | 0.000123382 | 1357049 | 7537 |
| TGC | GCA | 0.000169468 | 8.51342e-08 | 0 | 3.94585e-06 | 9.36484e-05 | 9.01999e-08 | 0 | 2.80804e-06 | 0.99749 | 8.1906e-07 | 0.002086 | 0.000152923 | 1364839 | 9837 |
| TGG | CCA | 5.0278e-06 | 6.54727e-08 | 0 | 1.94726e-06 | 7.93226e-05 | 2.55261e-07 | 0 | 5.16496e-05 | 0.997848 | 8.53703e-07 | 0.00189806 | 0.000114336 | 1726616 | 11512 |
| TGT | ACA | 2.09978e-05 | 9.46485e-08 | 0 | 1.00748e-06 | 0.000114438 | 1.03154e-07 | 0 | 1.62448e-06 | 0.997337 | 2.62995e-06 | 0.00230599 | 0.000216567 | 1211958 | 8744 |
| TTA | TAA | 2.11878e-06 | 6.85646e-07 | 1.62756e-07 | 0 | 1.87099e-07 | 5.64101e-07 | 1.58863e-07 | 0 | 0.99884 | 6.12976e-06 | 0.000916009 | 0.000234141 | 657190 | 2153 |
| TTC | GAA | 2.72867e-07 | 1.0498e-06 | 7.88643e-08 | 0 | 8.48779e-08 | 3.80421e-06 | 9.14092e-08 | 0 | 0.99916 | 2.51138e-06 | 0.000678676 | 0.000152997 | 1413462 | 4086 |
| TTG | CAA | 1.4021e-07 | 2.88088e-06 | 1.04999e-07 | 0 | 9.36086e-08 | 2.1715e-06 | 1.10146e-07 | 0 | 0.998685 | 9.12061e-06 | 0.00100336 | 0.000296664 | 1184577 | 4045 |
| TTT | AAA | 1.28656e-07 | 5.54024e-07 | 7.7897e-08 | 0 | 9.69531e-08 | 1.96166e-06 | 8.90693e-07 | 0 | 0.999186 | 4.82975e-06 | 0.000656169 | 0.000149721 | 1430193 | 3868 |
66 rows