NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_47870369-124121200) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
MUTECT2_PAIRED (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_47870369-124121200)

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Task Info

Status: succeeded
Hash: 2512515340b9
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_47870369-124121200
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: 73/2d1a7d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/2d1a7d1b5d593360b3663f689cbbde
Native ID: nf-732d1a7d1b5d593360b3663f689cbbde-04f10

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 2.7 GB / 8.0 GB
Process I/O (rchar / wchar): 2.7 GB / 11.6 MB
Disk I/O (read / write): 2.4 GB / 11.6 MB
Host: i-05222270dcbe6d3d7 ( on-demand)

Runtime

Submitted: Jan 28, 2026 10:22:25 AM
Completed: Jan 28, 2026 11:34:26 AM
Total Duration: 1h 12m

Phases

Queue: 1m 22s
Execution: 1h 5m
Stage/Unstage: 4m 52s

Attempt 3

Execution

Status: succeeded - cached
Hash: 31/9dffc9
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/9dffc9b7a10b1405725f7cc72ac8d7
Native ID: nf-319dffc9b7a10b1405725f7cc72ac8d7-dc784

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 2
Memory (peak / alloc): 2.9 GB / 8.0 GB
Process I/O (rchar / wchar): 2.7 GB / 11.6 MB
Disk I/O (read / write): 2.4 GB / 11.6 MB
Host: i-05f72021f51dbd849 ( on-demand)

Runtime

Submitted: Jan 27, 2026 4:24:43 PM
Completed: Jan 27, 2026 5:36:22 PM
Total Duration: 1h 11m

Phases

Queue: 2m 0s
Execution: 1h 6m
Stage/Unstage: 3m 30s

Attempt 2

Execution

Status: succeeded
Hash: 44/74b34e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/74b34eacd293dfba0b6e053e539db8
Native ID: nf-4474b34eacd293dfba0b6e053e539db8-4a4d0

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 2
Memory (peak / alloc): 2.6 GB / 8.0 GB
Process I/O (rchar / wchar): 3.8 GB / 10.2 MB
Disk I/O (read / write): 3.6 GB / 10.2 MB
Host: i-03d81428cca0b56b1 ( on-demand)

Runtime

Submitted: Jan 27, 2026 2:53:49 PM
Completed: Jan 27, 2026 3:44:02 PM
Total Duration: 50m 12s

Phases

Queue: 1m 49s
Execution: 43m 18s
Stage/Unstage: 5m 5s

Attempt 1

Execution

Status: succeeded
Hash: bd/232c78
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/232c78262a6cd487a88dc0fb545660
Native ID: nf-bd232c78262a6cd487a88dc0fb545660-1ca91

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 2
Memory (peak / alloc): 2.6 GB / 8.0 GB
Process I/O (rchar / wchar): 3.1 GB / 5.4 MB
Disk I/O (read / write): 730.5 MB / 5.4 MB
Host: i-07cd03522e376f4cf ( on-demand)

Runtime

Submitted: Jan 27, 2026 2:20:20 AM
Completed: Jan 27, 2026 2:51:54 AM
Total Duration: 31m 33s

Phases

Queue: 1m 1s
Execution: 26m 40s
Stage/Unstage: 3m 52s