NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_SNVS (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
MERGE_STRELKA_SNVS (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)

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Task Info

Status: succeeded
Hash: 2facb5e805b1
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_STRELKA:MERGE_STRELKA_SNVS
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32
Attempts: 3

Attempt 3

Execution

Status: succeeded
Hash: 98/a7e665
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/a7e66599d99294227a38ef8eb7dd48
Native ID: nf-98a7e66599d99294227a38ef8eb7dd48-ec2bd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.6 / 1
Memory (peak / alloc): 1.2 GB / 4.0 GB
Process I/O (rchar / wchar): 177.3 MB / 101.1 MB
Disk I/O (read / write): - / 101.1 MB
Host: i-0766e96e580fccfd8 ( spot)

Runtime

Submitted: Jan 27, 2026 4:48:16 PM
Completed: Jan 27, 2026 4:49:00 PM
Total Duration: 43s

Phases

Queue: 4s
Execution: 25s
Stage/Unstage: 14s

Attempt 2

Execution

Status: succeeded
Hash: 2b/d241cd
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2b/d241cdf04bdd952dd81ad6a828110b
Native ID: nf-2bd241cdf04bdd952dd81ad6a828110b-49463

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.9 / 1
Memory (peak / alloc): 1.4 GB / 4.0 GB
Process I/O (rchar / wchar): 142.9 MB / 57.6 MB
Disk I/O (read / write): - / 57.5 MB
Host: i-0675a2f490e8f1b97 ( spot)

Runtime

Submitted: Jan 27, 2026 3:21:30 PM
Completed: Jan 27, 2026 3:22:14 PM
Total Duration: 43s

Phases

Queue: 15s
Execution: 14s
Stage/Unstage: 14s

Attempt 1

Execution

Status: succeeded
Hash: 24/140f72
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/24/140f72624d5df7ac4f9d385cd067a9
Native ID: nf-24140f72624d5df7ac4f9d385cd067a9-7fa6b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.5 / 1
Memory (peak / alloc): 414.1 MB / 4.0 GB
Process I/O (rchar / wchar): 97.2 MB / 2.3 MB
Disk I/O (read / write): - / 2.3 MB
Host: i-06ab430dbdda5471c ( spot)

Runtime

Submitted: Jan 27, 2026 3:41:49 AM
Completed: Jan 27, 2026 3:42:10 AM
Total Duration: 20s

Phases

Queue: 14s
Execution: 4s
Stage/Unstage: 2s