NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
TABIX_VCF_FOR_ENTROPY (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller)

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Task Info

Status: succeeded
Hash: 3e03d1fb0e9f
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:TABIX_VCF_FOR_ENTROPY
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;haplotypecaller
Attempts: 5

Attempt 5

Execution

Status: succeeded - cached
Hash: a1/ff5067
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/ff5067a89cd5b02d6071022f8ad2bd
Native ID: nf-a1ff5067a89cd5b02d6071022f8ad2bd-71fcb

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 1
Memory (peak / alloc): 7.2 MB / 1.0 GB
Process I/O (rchar / wchar): 34.1 MB / 1.2 MB
Disk I/O (read / write): - / 1.2 MB
Host: i-081f6d7d764554ac4 ( spot)

Runtime

Submitted: Jan 27, 2026 5:00:04 PM
Completed: Jan 27, 2026 5:00:10 PM
Total Duration: 5s

Phases

Queue: 4s
Execution: 1s
Stage/Unstage: 0s

Attempt 4

Execution

Status: succeeded - cached
Hash: 47/e5cbec
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/e5cbec8a638ee8207dc5b5d81123d1
Native ID: nf-47e5cbec8a638ee8207dc5b5d81123d1-f20dc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 1
Memory (peak / alloc): 7.3 MB / 1.0 GB
Process I/O (rchar / wchar): 30.1 MB / 1.0 MB
Disk I/O (read / write): - / 1.0 MB
Host: i-0e80aac854e659336 ( spot)

Runtime

Submitted: Jan 27, 2026 4:41:44 PM
Completed: Jan 27, 2026 4:41:49 PM
Total Duration: 4s

Phases

Queue: 3s
Execution: 1s
Stage/Unstage: 0s

Attempt 3

Execution

Status: succeeded
Hash: ba/87096a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/87096ac91bd91b93b128d926748143
Native ID: nf-ba87096ac91bd91b93b128d926748143-e0bbc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 1
Memory (peak / alloc): 3.2 MB / 1.0 GB
Process I/O (rchar / wchar): 196.0 KB / 20.9 KB
Disk I/O (read / write): - / 24.0 KB
Host: i-0ecb727d53aac84ba ( spot)

Runtime

Submitted: Jan 27, 2026 4:41:10 PM
Completed: Jan 27, 2026 4:41:16 PM
Total Duration: 5s

Phases

Queue: 4s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: succeeded
Hash: 32/f5a182
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/f5a182da46e916fc80e5792e8495fd
Native ID: nf-32f5a182da46e916fc80e5792e8495fd-4ba2b

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.8 / 1
Memory (peak / alloc): 3.3 MB / 1.0 GB
Process I/O (rchar / wchar): 161.9 KB / 14.8 KB
Disk I/O (read / write): - / 16.0 KB
Host: i-0d47f251c10fdebed ( spot)

Runtime

Submitted: Jan 27, 2026 12:45:45 PM
Completed: Jan 27, 2026 12:45:50 PM
Total Duration: 4s

Phases

Queue: 2s
Execution: -
Stage/Unstage: -

Attempt 1

Execution

Status: succeeded
Hash: 47/1f3c03
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/htslib:1.20--h5efdd21_2
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/1f3c03a15baf20808d91ff6f96c1bd
Native ID: nf-471f3c03a15baf20808d91ff6f96c1bd-a0935

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 1
Memory (peak / alloc): 3.3 MB / 2.0 GB
Process I/O (rchar / wchar): 161.8 KB / 12.3 KB
Disk I/O (read / write): - / 16.0 KB
Host: i-0d37f05ae3de287b3 ( spot)

Runtime

Submitted: Jan 26, 2026 9:47:47 PM
Completed: Jan 26, 2026 9:47:52 PM
Total Duration: 4s

Phases

Queue: 2s
Execution: -
Stage/Unstage: -