NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:BAM_MERGE_INDEX_SAMTOOLS_R2:INDEX_MERGE_BAM (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
INDEX_MERGE_BAM (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33)

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Task Info

Status: succeeded
Hash: 5f4b42fdc854
Process: NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE_CUSTOM:BAM_MERGE_INDEX_SAMTOOLS_R2:INDEX_MERGE_BAM
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 90/9128c3
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/9128c32d7b66188023f20ca336fa8b
Native ID: nf-909128c32d7b66188023f20ca336fa8b-2e245

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.3 / 2
Memory (peak / alloc): 7.2 MB / 12.0 GB
Process I/O (rchar / wchar): 47.7 MB / 69.8 KB
Disk I/O (read / write): - / 72.0 KB
Host: i-09de6507ea61f22f7 ( spot)

Runtime

Submitted: Jan 27, 2026 3:17:40 PM
Completed: Jan 27, 2026 3:17:46 PM
Total Duration: 5s

Phases

Queue: 3s
Execution: 1s
Stage/Unstage: 1s

Attempt 1

Execution

Status: succeeded
Hash: 43/c7a0e2
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/c7a0e266dd1ab36cc0e021b211497d
Native ID: nf-43c7a0e266dd1ab36cc0e021b211497d-380e6

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.4 / 2
Memory (peak / alloc): 7.3 MB / 12.0 GB
Process I/O (rchar / wchar): 31.9 MB / 65.5 KB
Disk I/O (read / write): - / 68.0 KB
Host: i-093b502b7020770bd ( spot)

Runtime

Submitted: Jan 27, 2026 2:35:18 AM
Completed: Jan 27, 2026 2:35:24 AM
Total Duration: 5s

Phases

Queue: 4s
Execution: 1s
Stage/Unstage: 0s