NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGE_MUTECT2 (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
MERGE_MUTECT2 (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)

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Task Info

Status: succeeded
Hash: 7a72f7679259
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MERGE_MUTECT2
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: 96/63fdd7
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/63fdd79848eccffb26ec388a50ac18
Native ID: nf-9663fdd79848eccffb26ec388a50ac18-36743

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.2 / 2
Memory (peak / alloc): 1006.5 MB / 8.0 GB
Process I/O (rchar / wchar): 136.5 MB / 37.7 MB
Disk I/O (read / write): - / 37.7 MB
Host: i-0ddd51277d9e76467 ( on-demand)

Runtime

Submitted: Jan 28, 2026 12:19:42 PM
Completed: Jan 28, 2026 12:20:08 PM
Total Duration: 25s

Phases

Queue: 3s
Execution: 8s
Stage/Unstage: 14s

Attempt 3

Execution

Status: succeeded - cached
Hash: 86/f0b06d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/f0b06d350d19a8b6df7608573b53fe
Native ID: nf-86f0b06d350d19a8b6df7608573b53fe-bac77

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.3 / 2
Memory (peak / alloc): 937.3 MB / 8.0 GB
Process I/O (rchar / wchar): 136.6 MB / 37.7 MB
Disk I/O (read / write): - / 37.7 MB
Host: i-09ff0a345dc7df20c ( on-demand)

Runtime

Submitted: Jan 27, 2026 6:24:14 PM
Completed: Jan 27, 2026 6:24:39 PM
Total Duration: 24s

Phases

Queue: 3s
Execution: 8s
Stage/Unstage: 13s

Attempt 2

Execution

Status: succeeded
Hash: 19/8638e5
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/19/8638e558fa77d45c6ba2b3bf3639b7
Native ID: nf-198638e558fa77d45c6ba2b3bf3639b7-2eef3

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 2.2 / 2
Memory (peak / alloc): 858.6 MB / 8.0 GB
Process I/O (rchar / wchar): 136.1 MB / 37.1 MB
Disk I/O (read / write): - / 37.1 MB
Host: i-05982ab731eda3b3e ( on-demand)

Runtime

Submitted: Jan 27, 2026 4:13:29 PM
Completed: Jan 27, 2026 4:13:54 PM
Total Duration: 24s

Phases

Queue: 2s
Execution: 8s
Stage/Unstage: 14s

Attempt 1

Execution

Status: succeeded
Hash: a7/d2e61b
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/d2e61b8ef0994ca46aafe8ed27f703
Native ID: nf-a7d2e61b8ef0994ca46aafe8ed27f703-d89dd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.5 / 2
Memory (peak / alloc): 334.7 MB / 8.0 GB
Process I/O (rchar / wchar): 98.4 MB / 3.3 MB
Disk I/O (read / write): - / 3.3 MB
Host: i-022352df20729e396 ( on-demand)

Runtime

Submitted: Jan 27, 2026 7:40:00 AM
Completed: Jan 27, 2026 7:40:08 AM
Total Duration: 7s

Phases

Queue: 2s
Execution: 3s
Stage/Unstage: 2s