NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
CNVKIT_BATCH (1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32)

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Task Info

Status: succeeded
Hash: 84c0abd8e22a
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH
Tag: 1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32
Attempts: 3

Attempt 3

Execution

Status: succeeded - cached
Hash: d8/cf7f2d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/mulled-v2-780d630a9bb6a0ff2e7b6f730906fd703e40e98f:c94363856059151a2974dc501fb07a0360cc60a3-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/cf7f2d608e7178447a403d65e152b8
Native ID: nf-d8cf7f2d608e7178447a403d65e152b8-6179e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 4.5 / 16
Memory (peak / alloc): 5.5 GB / 64.0 GB
Process I/O (rchar / wchar): 58.0 GB / 216.0 MB
Disk I/O (read / write): - / 171.7 MB
Host: i-03041f25aa877d7b2 ( on-demand)

Runtime

Submitted: Jan 27, 2026 4:24:34 PM
Completed: Jan 27, 2026 4:33:41 PM
Total Duration: 9m 6s

Phases

Queue: 2m 5s
Execution: 5m 39s
Stage/Unstage: 1m 22s

Attempt 2

Execution

Status: succeeded
Hash: 66/8beb21
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/mulled-v2-780d630a9bb6a0ff2e7b6f730906fd703e40e98f:c94363856059151a2974dc501fb07a0360cc60a3-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/8beb21a20e997d22922cc537abacc5
Native ID: nf-668beb21a20e997d22922cc537abacc5-db7b6

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 4.3 / 16
Memory (peak / alloc): 8.9 GB / 64.0 GB
Process I/O (rchar / wchar): 100.3 GB / 216.2 MB
Disk I/O (read / write): - / 171.9 MB
Host: i-015718c0a174ac326 ( on-demand)

Runtime

Submitted: Jan 27, 2026 12:32:28 PM
Completed: Jan 27, 2026 12:40:55 PM
Total Duration: 8m 26s

Phases

Queue: 1m 9s
Execution: 6m 25s
Stage/Unstage: 52s

Attempt 1

Execution

Status: succeeded
Hash: 78/65661a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/mulled-v2-780d630a9bb6a0ff2e7b6f730906fd703e40e98f:c94363856059151a2974dc501fb07a0360cc60a3-0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/65661a8751015ae454b6a76dfdf2b0
Native ID: nf-7865661a8751015ae454b6a76dfdf2b0-313fa

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.9 / 6
Memory (peak / alloc): 2.9 GB / 48.0 GB
Process I/O (rchar / wchar): 143.2 GB / 85.8 MB
Disk I/O (read / write): - / 70.6 MB
Host: i-0d37f05ae3de287b3 ( spot)

Runtime

Submitted: Jan 26, 2026 9:38:30 PM
Completed: Jan 26, 2026 9:46:54 PM
Total Duration: 8m 23s

Phases

Queue: 12s
Execution: 7m 34s
Stage/Unstage: 37s