NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_124121503-133690466) - mipeters-sarek-binpacking-14 - Workflow Tracker

Runs
mipeters-sar..npacking-14
Tasks
MUTECT2_PAIRED (1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_124121503-133690466)

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Task Info

Status: succeeded
Hash: 86c172c37713
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:MUTECT2_PAIRED
Tag: 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32;chr10_124121503-133690466
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: 53/295891
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/2958912f62e58806811f9b4cdcb956
Native ID: nf-532958912f62e58806811f9b4cdcb956-f6012

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 1.0 GB / 8.0 GB
Process I/O (rchar / wchar): 393.8 MB / 2.4 MB
Disk I/O (read / write): 319.9 MB / 2.4 MB
Host: i-05222270dcbe6d3d7 ( on-demand)

Runtime

Submitted: Jan 28, 2026 10:22:27 AM
Completed: Jan 28, 2026 10:34:58 AM
Total Duration: 12m 30s

Phases

Queue: 1m 20s
Execution: 6m 25s
Stage/Unstage: 4m 45s

Attempt 3

Execution

Status: succeeded - cached
Hash: c1/7920a9
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/7920a921223ac9d654c63d297c6c01
Native ID: nf-c17920a921223ac9d654c63d297c6c01-66300

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 1.1 GB / 8.0 GB
Process I/O (rchar / wchar): 393.8 MB / 2.4 MB
Disk I/O (read / write): 305.7 MB / 2.4 MB
Host: i-05f72021f51dbd849 ( on-demand)

Runtime

Submitted: Jan 27, 2026 4:24:43 PM
Completed: Jan 27, 2026 4:36:52 PM
Total Duration: 12m 8s

Phases

Queue: 2m 0s
Execution: 6m 16s
Stage/Unstage: 3m 52s

Attempt 2

Execution

Status: succeeded
Hash: 04/394f4a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/394f4a76c16e336e7cca9e5c1e45b3
Native ID: nf-04394f4a76c16e336e7cca9e5c1e45b3-34c3f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.5 / 2
Memory (peak / alloc): 1.6 GB / 8.0 GB
Process I/O (rchar / wchar): 513.9 MB / 2.3 MB
Disk I/O (read / write): 454.9 MB / 2.3 MB
Host: i-03d81428cca0b56b1 ( on-demand)

Runtime

Submitted: Jan 27, 2026 2:53:48 PM
Completed: Jan 27, 2026 3:05:03 PM
Total Duration: 11m 14s

Phases

Queue: 1m 50s
Execution: 4m 32s
Stage/Unstage: 4m 52s

Attempt 1

Execution

Status: succeeded
Hash: 49/b1d3ec
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/b1d3ec593a592dc9cce76bc4981f9e
Native ID: nf-49b1d3ec593a592dc9cce76bc4981f9e-9b247

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.2 / 2
Memory (peak / alloc): 3.0 GB / 8.0 GB
Process I/O (rchar / wchar): 34.5 GB / 60.1 MB
Disk I/O (read / write): 33.5 GB / 60.0 MB
Host: i-07cd03522e376f4cf ( on-demand)

Runtime

Submitted: Jan 27, 2026 2:20:20 AM
Completed: Jan 27, 2026 7:37:17 AM
Total Duration: 5h 16m

Phases

Queue: 1m 1s
Execution: 5h 12m
Stage/Unstage: 3m 54s